Hs05520281_cn

• Gene Symbol: RAB40B
• Assay Reference Genome Location: Chr.17:82663491 on build GRCh38
• Cytoband: 17q25.3

Target Gene Details

• Entrez Gene ID: 10966
• Gene Name: RAB40B, member RAS oncogene family
• Gene Aliases: RAR, SEC4L
• Location: Chr.17:82657067-82698722 on Build GRCh38
• Assay Gene Location: Within Intron 6

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
RAB40B	NM_006822.2			NP_006813.1
	XM_005256334.4			XP_005256391.1
	XM_005256335.3			XP_005256392.1
	XM_006722271.3			XP_006722334.1
	XM_011523528.2			XP_011521830.1
	XM_017024042.1			XP_016879531.1
	XM_017024043.1			XP_016879532.1
	AB209711.1			BAD92948.1
	AL047483.1
	BC018039.1			AAH18039.1
	U05227.1			AAA17031.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv1067553	Chr.17:82530808 - 83091923 on Build GRCh38	Loss	MIR4525 FN3K LOC105376791 RAB40B FOXK2 ZNF750 TBCD LOC101929552 FN3KRP LOC105371944 B3GNTL1 WDR45B METRNL
nsv833575	Chr.17:82660876 - 82847512 on Build GRCh38	Loss	MIR4525 FN3K LOC105376791 RAB40B ZNF750 TBCD LOC101929552 FN3KRP
esv3641436	Chr.17:82659688 - 82666055 on Build GRCh38	Loss	RAB40B
nsv1067362	Chr.17:82569201 - 82681793 on Build GRCh38	Gain	MIR4525 RAB40B FOXK2 WDR45B
nsv1062980	Chr.17:82408938 - 82687942 on Build GRCh38	Gain	MIR4525 NARF RAB40B FOXK2 C17orf62 WDR45B HEXDC OGFOD3
nsv428351	Chr.17:81152631 - 83064073 on Build GRCh38	Gain	MIR4525 UTS2R STRA13 TEPSIN LOC105371925 FOXK2 C17orf62 MAFG SLC38A10 RFNG LOC105376790 LOC101929552 FSCN2 AATK ANAPC11 FAAP100 PDE6G PCYT2 NPB HGS FN3K LOC105376791 SLC25A10 TMEM105 ZNF750 CCDC137 GCGR DCXR CCDC57 B3GNTL1 NARF ALYREF LOC100130370 MCRIP1 FASN TEX19 WDR45B LINC00482 ARL16 ASPSCR1 LRRC45 SIRT7 MIR6787 NPLOC4 C17orf89 CD7 FN3KRP CEP131 SNORD134 MIR6786 MYADML2 LOC105371944 AATK-AS1 DUS1L MRPL12 BAHCC1 CSNK1D GPS1 MIR4740 PPP1R27 PYCR1 LOC101929511 RAB40B NOTUM MAFG-AS1 HEXDC TBCD P4HB OXLD1 SECTM1 SLC16A3 ARHGDIA ACTG1 RAC3 MIR3186 OGFOD3 TSPAN10
nsv509680	Chr.17:82661313 - 82679596 on Build GRCh38	Insertion	MIR4525 RAB40B
esv2762577	Chr.17:82244836 - 82838431 on Build GRCh38	Gain+Loss	MIR4525 FN3K UTS2R LOC105376791 LOC101929511 RAB40B FOXK2 C17orf62 HEXDC ZNF750 TBCD LOC105376790 CD7 LOC101929552 FN3KRP SECTM1 NARF TEX19 WDR45B CSNK1D OGFOD3
esv21913	Chr.17:81828123 - 83103548 on Build GRCh38	Gain+Loss	MIR4525 UTS2R STRA13 FOXK2 C17orf62 MAFG RFNG LOC105376790 LOC101929552 ANAPC11 PCYT2 NPB FN3K LOC105376791 ZNF750 DCXR CCDC57 B3GNTL1 NARF ALYREF MCRIP1 FASN TEX19 WDR45B ASPSCR1 LRRC45 SIRT7 MIR6787 CD7 FN3KRP SNORD134 MYADML2 LOC105371944 DUS1L CSNK1D GPS1 METRNL PPP1R27 PYCR1 LOC101929511 RAB40B NOTUM MAFG-AS1 HEXDC TBCD P4HB SECTM1 SLC16A3 ARHGDIA RAC3 OGFOD3

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

small GTPase mediated signal transduction
protein ubiquitination
symbiont intracellular protein transport in host

Function(s)

GTP binding