Hs05712782_cn

• Gene Symbol: ACP6
• Assay Reference Genome Location: Chr.1:147657203 on build GRCh38
• Cytoband: 1q21.2

Target Gene Details

• Entrez Gene ID: 51205
• Gene Name: acid phosphatase 6, lysophosphatidic
• Gene Aliases: ACPL1, LPAP, PACPL1
• Location: Chr.1:147629658-147670543 on Build GRCh38
• Assay Gene Location: Within Intron 4

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
ACP6	NM_001323625.1			NP_001310554.1
	NM_016361.4			NP_057445.4
	NR_136633.1
	NR_136634.1
	NR_136635.1
	NR_136636.1
	XM_011509601.2			XP_011507903.1
	XM_017001422.1			XP_016856911.1
	AB030039.2			BAA94309.2
	AB031478.1			BAA89311.1
	AB209248.1			BAD92485.1
	AK000657.1			BAA91310.1
	AK308593.1
	AK310693.1
	AY358552.1			AAQ88916.1
	BC009965.1			AAH09965.1
	BC034686.1			AAH34686.1
	CR457101.1			CAG33382.1
	KJ534759.1
	KJ535036.1
	KJ535044.1
	KJ535055.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
dgv327n100	Chr.1:146028214 - 148860637 on Build GRCh38	Gain	LOC101927468 LOC100996517 RNVU1-7 GPR89B PDE4DIP MIR5087 NOTCH2NL GJA5 FMO5 PPIAL4G CHD1L LOC100505824 RNVU1-6 LOC101928979 HYDIN2 NBPF12 BCL9 RNVU1-8 RNU1-13P NUDT4P2 LOC728989 PRKAB2 LOC100132057 RNVU1-3 CH17-408M7.1 GJA8 PDZK1P1 LOC105371242 PDIA3P1 NBPF14 RNVU1-1 LINC01138 LOC284561 NBPF13P NBPF10 LINC00624 MIR6077 LOC100996763 NBPF11 NUDT4P1 ACP6 LOC105371226
nsv1005055	Chr.1:145642988 - 148991068 on Build GRCh38	Loss	LOC101927468 LOC100996517 RNVU1-7 GPR89B PDE4DIP MIR5087 PPIAL4G CHD1L LOC100505824 RNF115 RNVU1-6 CD160 LOC101928979 PDZK1 NBPF12 BCL9 RNU1-13P LIX1L GNRHR2 ITGA10 RNVU1-3 CH17-408M7.1 ANKRD34A GJA8 PDZK1P1 LOC105371242 PDIA3P1 LINC01138 LOC284561 POLR3C PEX11B TXNIP MIR6077 LOC100996763 LOC105371226 MIR6736 POLR3GL GPR89A NOTCH2NL GJA5 FMO5 HYDIN2 RNVU1-8 NUDT4P2 LOC728989 ANKRD35 PRKAB2 LOC100132057 NUDT17 NBPF14 RNVU1-1 NBPF13P NBPF10 LINC00624 PIAS3 HFE2 NBPF11 NUDT4P1 ACP6 RBM8A
esv2761299	Chr.1:146068341 - 148926801 on Build GRCh38	Gain+Loss	LOC101927468 LOC100996517 RNVU1-7 GPR89B PDE4DIP MIR5087 NOTCH2NL GJA5 FMO5 PPIAL4G CHD1L LOC100505824 HYDIN2 NBPF12 BCL9 RNVU1-8 RNU1-13P NUDT4P2 LOC728989 PRKAB2 LOC100132057 RNVU1-3 CH17-408M7.1 GJA8 PDZK1P1 LOC105371242 PDIA3P1 NBPF14 RNVU1-1 LINC01138 LOC284561 NBPF13P NBPF10 LINC00624 MIR6077 LOC100996763 NBPF11 NUDT4P1 ACP6 LOC105371226
nsv509457	Chr.1:145948024 - 149021821 on Build GRCh38	Insertion	LOC101927468 LOC100996517 POLR3GL RNVU1-7 GPR89B PDE4DIP MIR5087 NOTCH2NL GJA5 FMO5 PPIAL4G CHD1L LOC100505824 RNVU1-6 LOC101928979 HYDIN2 NBPF12 BCL9 RNVU1-8 RNU1-13P NUDT4P2 LIX1L LOC728989 PRKAB2 LOC100132057 RNVU1-3 CH17-408M7.1 ANKRD34A GJA8 PDZK1P1 LOC105371242 PDIA3P1 NBPF14 RNVU1-1 LINC01138 LOC284561 NBPF13P NBPF10 TXNIP LINC00624 HFE2 MIR6077 LOC100996763 NBPF11 NUDT4P1 ACP6 LOC105371226
nsv1132304	Chr.1:146186094 - 148977674 on Build GRCh38	Duplication	LOC101927468 LOC100996517 RNVU1-7 GPR89B PDE4DIP MIR5087 NOTCH2NL GJA5 FMO5 PPIAL4G CHD1L LOC100505824 HYDIN2 NBPF12 BCL9 RNVU1-8 RNU1-13P NUDT4P2 LOC728989 PRKAB2 LOC100132057 RNVU1-3 CH17-408M7.1 GJA8 PDZK1P1 LOC105371242 PDIA3P1 NBPF14 RNVU1-1 LINC01138 LOC284561 NBPF13P LINC00624 MIR6077 LOC100996763 NBPF11 NUDT4P1 ACP6 LOC105371226
nsv831426	Chr.1:147618125 - 147793153 on Build GRCh38	Loss	ACP6 GJA5 BCL9
nsv1003688	Chr.1:146036817 - 148934526 on Build GRCh38	Gain	LOC101927468 LOC100996517 RNVU1-7 GPR89B PDE4DIP MIR5087 NOTCH2NL GJA5 FMO5 PPIAL4G CHD1L LOC100505824 RNVU1-6 LOC101928979 HYDIN2 NBPF12 BCL9 RNVU1-8 RNU1-13P NUDT4P2 LOC728989 PRKAB2 LOC100132057 RNVU1-3 CH17-408M7.1 GJA8 PDZK1P1 LOC105371242 PDIA3P1 NBPF14 RNVU1-1 LINC01138 LOC284561 NBPF13P NBPF10 LINC00624 MIR6077 LOC100996763 NBPF11 NUDT4P1 ACP6 LOC105371226
dgv66e199	Chr.1:146055970 - 149056514 on Build GRCh38	Deletion	LOC101927468 LOC100996517 NBPF9 RNVU1-7 GPR89B PDE4DIP MIR5087 NOTCH2NL GJA5 FMO5 PPIAL4G CHD1L LOC100505824 LOC101928979 HYDIN2 NBPF12 BCL9 RNVU1-8 RNU1-13P NUDT4P2 LOC728989 PRKAB2 LOC100132057 RNVU1-3 CH17-408M7.1 GJA8 PDZK1P1 LOC105371242 PDIA3P1 NBPF14 RNVU1-1 LINC01138 LOC284561 NBPF13P NBPF10 LINC00624 MIR6077 LOC100996763 NBPF11 NUDT4P1 ACP6 LOC105371226

More Information

Additional Information:

For this assay, SNP(s) [rs77983199] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

phosphatase

Gene Ontology Categories:

Process(es)

phospholipid metabolic process
dephosphorylation
lysobisphosphatidic acid metabolic process

Function(s)

acid phosphatase activity
lysophosphatidic acid phosphatase activity