Hs05802244_cn

• Gene Symbol: ACP6
• Assay Reference Genome Location: Chr.1:147651654 on build GRCh38
• Cytoband: 1q21.2

Target Gene Details

• Entrez Gene ID: 51205
• Gene Name: acid phosphatase 6, lysophosphatidic
• Gene Aliases: ACPL1, LPAP, PACPL1
• Location: Chr.1:147629658-147670543 on Build GRCh38
• Assay Gene Location: Within Intron 9

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
ACP6	NM_001323625.1			NP_001310554.1
	NM_016361.4			NP_057445.4
	NR_136633.1
	NR_136634.1
	NR_136635.1
	NR_136636.1
	XM_011509601.2			XP_011507903.1
	XM_017001422.1			XP_016856911.1
	AB030039.2			BAA94309.2
	AB031478.1			BAA89311.1
	AB209248.1	7	2011	BAD92485.1
	AK000657.1			BAA91310.1
	AY358552.1			AAQ88916.1
	BC009965.1			AAH09965.1
	BC034686.1			AAH34686.1
	CR457101.1			CAG33382.1
	KJ534759.1
	KJ535036.1
	KJ535044.1
	KJ535055.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
dgv327n100	Chr.1:146028214 - 148860637 on Build GRCh38	Gain	CHD1L MIR5087 PRKAB2 MIR6077 GJA8 LOC101927468 CH17-408M7.1 NUDT4P2 LOC100996763 HYDIN2 NUDT4P1 LOC728989 RNVU1-7 LINC01138 NBPF11 LOC100996517 NBPF10 RNVU1-6 NBPF12 NBPF13P PDE4DIP LOC105371242 PDZK1P1 GPR89B LOC100505824 BCL9 GJA5 LINC00624 LOC284561 FMO5 LOC100132057 LOC105371226 NBPF14 PDIA3P1 ACP6 RNVU1-1 LOC101928979 PPIAL4G NOTCH2NL RNU1-13P RNVU1-3 RNVU1-8
nsv1005055	Chr.1:145642988 - 148991068 on Build GRCh38	Loss	MIR5087 ITGA10 LIX1L ANKRD35 GJA8 LOC101927468 CH17-408M7.1 NUDT4P2 NUDT17 HYDIN2 NUDT4P1 LOC728989 PEX11B POLR3GL NBPF11 LOC100996517 RNVU1-6 NBPF13P MIR6736 GPR89B GJA5 LINC00624 LOC105371226 RBM8A PIAS3 RNF115 ACP6 LOC101928979 PPIAL4G GNRHR2 NOTCH2NL RNVU1-3 CHD1L PRKAB2 MIR6077 TXNIP LOC100996763 POLR3C RNVU1-7 LINC01138 NBPF10 GPR89A NBPF12 PDE4DIP LOC105371242 PDZK1P1 LOC100505824 BCL9 LOC284561 FMO5 LOC100132057 NBPF14 PDZK1 HFE2 PDIA3P1 ANKRD34A CD160 RNVU1-1 RNU1-13P RNVU1-8
esv2761299	Chr.1:146068341 - 148926801 on Build GRCh38	Gain+Loss	CHD1L MIR5087 PRKAB2 MIR6077 GJA8 LOC101927468 CH17-408M7.1 NUDT4P2 LOC100996763 HYDIN2 NUDT4P1 LOC728989 RNVU1-7 LINC01138 NBPF11 LOC100996517 NBPF10 NBPF12 NBPF13P PDE4DIP LOC105371242 PDZK1P1 GPR89B LOC100505824 BCL9 GJA5 LINC00624 LOC284561 FMO5 LOC100132057 LOC105371226 NBPF14 PDIA3P1 ACP6 RNVU1-1 PPIAL4G NOTCH2NL RNU1-13P RNVU1-3 RNVU1-8
nsv509457	Chr.1:145948024 - 149021821 on Build GRCh38	Insertion	CHD1L MIR5087 PRKAB2 MIR6077 LIX1L GJA8 TXNIP LOC101927468 CH17-408M7.1 NUDT4P2 LOC100996763 HYDIN2 NUDT4P1 LOC728989 RNVU1-7 POLR3GL LINC01138 NBPF11 LOC100996517 NBPF10 RNVU1-6 NBPF12 NBPF13P PDE4DIP LOC105371242 PDZK1P1 GPR89B LOC100505824 BCL9 GJA5 LINC00624 LOC284561 FMO5 LOC100132057 LOC105371226 NBPF14 HFE2 PDIA3P1 ANKRD34A ACP6 RNVU1-1 LOC101928979 PPIAL4G NOTCH2NL RNU1-13P RNVU1-3 RNVU1-8
nsv1132304	Chr.1:146186094 - 148977674 on Build GRCh38	Duplication	CHD1L MIR5087 PRKAB2 MIR6077 GJA8 LOC101927468 CH17-408M7.1 NUDT4P2 LOC100996763 HYDIN2 NUDT4P1 LOC728989 RNVU1-7 LINC01138 NBPF11 LOC100996517 NBPF12 NBPF13P PDE4DIP LOC105371242 PDZK1P1 GPR89B LOC100505824 BCL9 GJA5 LINC00624 LOC284561 FMO5 LOC100132057 LOC105371226 NBPF14 PDIA3P1 ACP6 RNVU1-1 PPIAL4G NOTCH2NL RNU1-13P RNVU1-3 RNVU1-8
nsv831426	Chr.1:147618125 - 147793153 on Build GRCh38	Loss	ACP6 BCL9 GJA5
nsv1003688	Chr.1:146036817 - 148934526 on Build GRCh38	Gain	CHD1L MIR5087 PRKAB2 MIR6077 GJA8 LOC101927468 CH17-408M7.1 NUDT4P2 LOC100996763 HYDIN2 NUDT4P1 LOC728989 RNVU1-7 LINC01138 NBPF11 LOC100996517 NBPF10 RNVU1-6 NBPF12 NBPF13P PDE4DIP LOC105371242 PDZK1P1 GPR89B LOC100505824 BCL9 GJA5 LINC00624 LOC284561 FMO5 LOC100132057 LOC105371226 NBPF14 PDIA3P1 ACP6 RNVU1-1 LOC101928979 PPIAL4G NOTCH2NL RNU1-13P RNVU1-3 RNVU1-8
dgv66e199	Chr.1:146055970 - 149056514 on Build GRCh38	Deletion	CHD1L MIR5087 PRKAB2 MIR6077 GJA8 LOC101927468 CH17-408M7.1 NUDT4P2 NBPF9 LOC100996763 HYDIN2 NUDT4P1 LOC728989 RNVU1-7 LINC01138 NBPF11 LOC100996517 NBPF10 NBPF12 NBPF13P PDE4DIP LOC105371242 PDZK1P1 GPR89B LOC100505824 BCL9 GJA5 LINC00624 LOC284561 FMO5 LOC100132057 LOC105371226 NBPF14 PDIA3P1 ACP6 RNVU1-1 LOC101928979 PPIAL4G NOTCH2NL RNU1-13P RNVU1-3 RNVU1-8

More Information

Additional Information:

For this assay, SNP(s) [rs112671806] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

phosphatase

Gene Ontology Categories:

Process(es)

phospholipid metabolic process
dephosphorylation
lysobisphosphatidic acid metabolic process

Function(s)

acid phosphatase activity
lysophosphatidic acid phosphatase activity