Hs05890101_cn

• Gene Symbol: PRICKLE2
• Assay Reference Genome Location: Chr.3:64191118 on build GRCh38
• Cytoband: 3p14.1

Target Gene Details

• Entrez Gene ID: 166336
• Gene Name: prickle planar cell polarity protein 2
• Gene Aliases: EPM5
• Location: Chr.3:64093850-64445476 on Build GRCh38
• Assay Gene Location: Within Intron 5

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PRICKLE2	NM_198859.3			NP_942559.1
	XM_011533432.2			XP_011531734.1
	XM_011533433.2			XP_011531735.1
	XM_011533434.2			XP_011531736.1
	XM_011533435.2			XP_011531737.1
	XM_011533436.2			XP_011531738.1
	XM_011533437.2			XP_011531739.1
	XM_011533440.2			XP_011531742.1
	XM_017005798.1			XP_016861287.1
	AL833539.1
	BC119002.1

Target Gene Details

• Entrez Gene ID: 100874243
• Gene Name: PRICKLE2 antisense RNA 3
• Gene Aliases: -
• Location: Chr.3:64187544-64201561 on Build GRCh38
• Assay Gene Location: Within Intron 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PRICKLE2-AS3	NR_046702.1
	AK056491.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv834717	Chr.3:64086900 - 64265228 on Build GRCh38	Gain	PRICKLE2-AS3 PRICKLE2-AS2 PRICKLE2 LINC00994 PRICKLE2-AS1
nsv3851	Chr.3:64179135 - 64224047 on Build GRCh38	Deletion	PRICKLE2-AS3 PRICKLE2

More Information

Additional Information:

For this assay, SNP(s) [rs71281391] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

scaffold/adaptor protein

Gene Ontology Categories:

Process(es)

Wnt signaling pathway, planar cell polarity pathway

Function(s)

zinc ion binding