Hs05898922_cn

• Gene Symbol: PCBP4
• Assay Reference Genome Location: Chr.3:51965675 on build GRCh38
• Cytoband: 3p21.2

Target Gene Details

• Entrez Gene ID: 57060
• Gene Name: poly(rC) binding protein 4
• Gene Aliases: CBP, LIP4, MCG10
• Location: Chr.3:51957454-51967466 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCBP4	NM_001174100.1			NP_001167571.1
	NM_020418.3			NP_065151.2
	NM_033008.2			NP_127501.1
	XM_005265331.2			XP_005265388.1
	XM_006713269.1			XP_006713332.1
	XM_006713270.1			XP_006713333.1
	XM_017006916.1			XP_016862405.1
	XM_017006919.1			XP_016862408.1
	XM_017006920.1			XP_016862409.1
	AK001244.1
	AK023993.1			BAB14761.1
	AK225815.1
	BC003008.1			AAH03008.1
	BC004153.2			AAH04153.1
	BC017098.1			AAH17098.1
	DA074216.1
	DA701799.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv1003453	Chr.3:51928065 - 52065425 on Build GRCh38	Gain	GPR62 RPL29 ACY1 DUSP7 ABHD14B ABHD14A ABHD14A-ACY1 LINC00696 PARP3 RRP9 PCBP4
nsv508922	Chr.3:51940932 - 52009520 on Build GRCh38	Insertion	GPR62 RPL29 ACY1 ABHD14B ABHD14A ABHD14A-ACY1 PARP3 RRP9 PCBP4
nsv954857	Chr.3:51932485 - 52056584 on Build GRCh38	Deletion	GPR62 RPL29 ACY1 DUSP7 ABHD14B ABHD14A ABHD14A-ACY1 PARP3 RRP9 PCBP4
nsv520211	Chr.3:51738331 - 52132131 on Build GRCh38	Gain	ACY1 DUSP7 ABHD14A IQCF5 IQCF5-AS1 ABHD14A-ACY1 LINC00696 IQCF6 IQCF1 GPR62 IQCF3 POC1A RPL29 IQCF2 ABHD14B PARP3 IQCF4 RRP9 PCBP4

More Information

Additional Information:

For this assay, SNP(s) [rs80093522] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

RNA metabolism protein

Gene Ontology Categories:

Process(es)

DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest
regulation of mRNA stability

Function(s)

DNA binding
RNA binding
mRNA 3'-UTR binding
poly(A) RNA binding