Genomic Map
Back To TopAssay Details
Target Gene Details
Entrez Gene ID: | 54790 |
Gene Name: | tet methylcytosine dioxygenase 2 |
Gene Aliases: |
KIAA1546, MDS |
Location: |
Chr.4:105145875-105279803 on Build GRCh38 |
Assay Gene Location: | Within Intron 2 |
| Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
|---|---|---|---|---|
| TET2 | NM_001127208.2 | NP_001120680.1 | ||
| NM_017628.4 | NP_060098.3 | |||
| XM_005263082.2 | XP_005263139.1 | |||
| XM_006714242.3 | XP_006714305.1 | |||
| XM_017008319.1 | XP_016863808.1 | |||
| AI084057.1 | ||||
| AK055149.1 | ||||
| BC150180.1 | ||||
| BC150201.1 | ||||
| BX640738.1 | CAE45851.1 | |||
| DA391215.1 | ||||
| DR005542.1 | ||||
| FM992369.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
| Target Variation |
Location | CNV Subtype |
Genes |
|---|---|---|---|
| nsv830025 | Chr.4:105067719 - 105216789 on Build GRCh38 | Loss |
 TET2-AS1
TET2
|
| nsv950373 | Chr.4:105127544 - 105184443 on Build GRCh38 | Duplication |
TET2-AS1
TET2
|
| nsv1000196 | Chr.4:103475625 - 106148054 on Build GRCh38 | Loss |
GSTCD
ARHGEF38
TET2
PPA2
LOC101929577
ARHGEF38-IT1
TET2-AS1
NPNT
CXXC4
LOC101929529
TBCK
LOC101929468
TACR3
INTS12
|
| esv3601659 | Chr.4:105145497 - 105197242 on Build GRCh38 | Loss |
TET2-AS1
TET2
|
| esv3601657 | Chr.4:105012463 - 105162253 on Build GRCh38 | Loss |
TET2
|
| nsv595007 | Chr.4:104948391 - 105445052 on Build GRCh38 | Loss |
TET2-AS1
TET2
PPA2
|
Back To TopMore Information
Additional Information:
For this assay, SNP(s) [rs79862450] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic
Intronic
Non-exonic
DGV Variation
|
Gene Ontology Categories:
Back To Top