Hs06052828_cn

• Gene Symbol: GIN1
• Assay Reference Genome Location: Chr.5:103103526 on build GRCh38
• Cytoband: 5q21.1

Target Gene Details

• Entrez Gene ID: 54826
• Gene Name: gypsy retrotransposon integrase 1
• Gene Aliases: GIN-1, TGIN1, ZH2C2
• Location: Chr.5:103086000-103120149 on Build GRCh38
• Assay Gene Location: Within Intron 5

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
GIN1	NM_001317954.1			NP_001304883.1
	NM_017676.2			NP_060146.2
	NR_134299.1
	XM_005272028.3			XP_005272085.1
	XM_017009599.1			XP_016865088.1
	AK000132.1			BAA90963.1
	AK225572.1
	AK295796.1
	BC015325.1			AAH15325.1
	BC151135.1
	BC157835.1
	CR627424.1			CAH10511.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv830430	Chr.5:102996203 - 103156228 on Build GRCh38	Gain	PPIP5K2 PAM GIN1
nsv1029894	Chr.5:102284375 - 103249595 on Build GRCh38	Gain	SLCO4C1 SLCO6A1 LINC00491 PPIP5K2 PAM GIN1 LINC00492 LOC105379106

More Information

Additional Information:

For this assay, SNP(s) [rs74345565] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

DNA integration

Function(s)

nucleic acid binding