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See other ABCF1 CNV Assays ›
Gene Symbol
ABCF1
Assay Reference Genome
Location

Chr.6:30581782 on build GRCh38
Cytoband
6p21.33
Assay ID Hs06143756_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 23

Gene Name:

 ATP binding cassette subfamily F member 1

Gene Aliases:

 ABC27, ABC50

Location:

 Chr.6:30571393-30591532 on Build GRCh38

Assay Gene Location:

 Within Intron 8
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
ABCF1 NM_001025091.1 NP_001020262.1
NM_001090.2 NP_001081.1
AF027302.1 AAC70891.1
AK298061.1
AK307551.1
AL832430.1 CAH10648.1
BC034488.2 AAH34488.1
BC112923.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv1074389 Chr.6:29116522 - 31446623 on Build GRCh38 Deletion CDSN SNORD32B HLA-J HCG27 OR2H1 HCG17 MRPS18B NRM MAS1L GNL1 HCG4 MIR877 ZFP57 MDC1 LOC105375014 HCG4B HLA-H HLA-G LOC554223 HCG8 HLA-A DDR1 ABCF1 VARS2 LINC01015 HCG18 IFITM4P PPP1R18 C6orf136 HCG9 OR2J2 TRIM26 HLA-E HLA-B PRR3 HLA-F ZNRD1 PPP1R11 TCF19 GTF2H4 LINC00243 LOC101929006 HLA-L MICA HLA-F-AS1 HCG20 TRIM31-AS1 OR10C1 TRIM39 TRIM40 DPCR1 TRIM31 IER3 MDC1-AS1 TRIM15 HLA-K PPP1R10 PSORS1C1 SFTA2 OR5V1 OR12D2 C6orf15 OR12D3 GABBR1 TRIM39-RPP21 CCHCR1 PSORS1C3 HCG22 PSORS1C2 TRIM10 MIR6891 ZNRD1ASP TUBB RNF39 MIR4640 DHX16 MUC22 OR11A1 POU5F1 UBD OR2H2 RPP21 HLA-C MOG FLOT1 ATAT1 OR14J1 MUC21
nsv601481 Chr.6:30454855 - 31316476 on Build GRCh38 Loss DPCR1 IER3 MDC1-AS1 CDSN PPP1R10 PSORS1C1 SFTA2 HCG27 MRPS18B NRM GNL1 C6orf15 MIR877 MDC1 LOC105375014 CCHCR1 PSORS1C3 HCG22 PSORS1C2 DDR1 ABCF1 VARS2 TUBB MIR4640 DHX16 PPP1R18 MUC22 C6orf136 POU5F1 HLA-E PRR3 TCF19 GTF2H4 HLA-C LINC00243 FLOT1 HCG20 ATAT1 MUC21
nsv5244 Chr.6:30577334 - 30622026 on Build GRCh38 Deletion MIR877 PPP1R10 MRPS18B ABCF1
nsv1122126 Chr.6:28628023 - 31244023 on Build GRCh38 Deletion OR2W1 CDSN SNORD32B HLA-J HCG27 OR2H1 HCG17 MRPS18B NRM MAS1L GNL1 HCG4 MIR877 ZFP57 MDC1 LOC105375014 HCG4B HLA-H HLA-G LOC554223 HCG8 HLA-A DDR1 ABCF1 VARS2 LINC01015 HCG18 IFITM4P PPP1R18 C6orf136 HCG9 OR2J2 TRIM26 HLA-E LINC01556 PRR3 HLA-F ZNRD1 PPP1R11 TCF19 GTF2H4 TRIM27 LINC00243 LOC101929006 HLA-L HLA-F-AS1 HCG20 TRIM31-AS1 OR10C1 TRIM39 TRIM40 DPCR1 TRIM31 IER3 MDC1-AS1 TRIM15 HLA-K PPP1R10 PSORS1C1 SFTA2 OR5V1 OR12D2 C6orf15 OR2B3 LOC100129636 OR12D3 GABBR1 TRIM39-RPP21 CCHCR1 PSORS1C3 HCG22 PSORS1C2 TRIM10 ZNRD1ASP TUBB RNF39 MIR4640 DHX16 MUC22 OR11A1 POU5F1 UBD OR2H2 LINC01623 LINC00533 HCG16 RPP21 ZNF311 OR2J3 MOG FLOT1 HCG14 ATAT1 OR14J1 MUC21
nsv1144137 Chr.6:29720323 - 31338123 on Build GRCh38 Deletion CDSN HLA-J HCG27 HCG17 MRPS18B NRM GNL1 HCG4 MIR877 MDC1 LOC105375014 HCG4B HLA-H HLA-G LOC554223 HCG8 HLA-A DDR1 ABCF1 VARS2 HCG18 IFITM4P PPP1R18 C6orf136 HCG9 TRIM26 HLA-E PRR3 HLA-F ZNRD1 PPP1R11 TCF19 GTF2H4 LINC00243 HLA-L HLA-F-AS1 HCG20 TRIM31-AS1 TRIM39 TRIM40 DPCR1 TRIM31 IER3 MDC1-AS1 TRIM15 HLA-K PPP1R10 PSORS1C1 SFTA2 C6orf15 TRIM39-RPP21 CCHCR1 PSORS1C3 HCG22 PSORS1C2 TRIM10 ZNRD1ASP TUBB RNF39 MIR4640 DHX16 MUC22 POU5F1 RPP21 HLA-C FLOT1 ATAT1 MUC21
esv2731791 Chr.6:30404802 - 31346410 on Build GRCh38 Deletion DPCR1 IER3 MDC1-AS1 CDSN PPP1R10 PSORS1C1 SFTA2 HCG27 MRPS18B NRM GNL1 C6orf15 MIR877 MDC1 LOC105375014 CCHCR1 PSORS1C3 HCG22 PSORS1C2 DDR1 ABCF1 VARS2 TUBB MIR4640 DHX16 PPP1R18 MUC22 C6orf136 POU5F1 HLA-E PRR3 TCF19 GTF2H4 HLA-C LINC00243 FLOT1 HCG20 ATAT1 MUC21
nsv601264 Chr.6:29883666 - 31320716 on Build GRCh38 Loss CDSN HLA-J HCG27 HCG17 MRPS18B NRM GNL1 MIR877 MDC1 LOC105375014 HCG4B HLA-H HCG8 HLA-A DDR1 ABCF1 VARS2 HCG18 PPP1R18 C6orf136 HCG9 TRIM26 HLA-E PRR3 ZNRD1 PPP1R11 TCF19 GTF2H4 LINC00243 HLA-L HCG20 TRIM31-AS1 TRIM39 TRIM40 DPCR1 TRIM31 IER3 MDC1-AS1 TRIM15 HLA-K PPP1R10 PSORS1C1 SFTA2 C6orf15 TRIM39-RPP21 CCHCR1 PSORS1C3 HCG22 PSORS1C2 TRIM10 ZNRD1ASP TUBB RNF39 MIR4640 DHX16 MUC22 POU5F1 RPP21 HLA-C FLOT1 ATAT1 MUC21
esv2670269 Chr.6:30498650 - 31067145 on Build GRCh38 Deletion DPCR1 IER3 MDC1-AS1 PPP1R10 SFTA2 MRPS18B NRM GNL1 MIR877 MDC1 LOC105375014 HCG22 DDR1 ABCF1 VARS2 TUBB MIR4640 DHX16 PPP1R18 MUC22 C6orf136 PRR3 GTF2H4 LINC00243 FLOT1 HCG20 ATAT1 MUC21
esv3411275 Chr.6:29981607 - 31490616 on Build GRCh38 Duplication CDSN HLA-J HCG27 HCG17 MRPS18B NRM GNL1 MIR877 MDC1 LOC105375014 HCG8 DDR1 ABCF1 VARS2 HCP5 HCG18 PPP1R18 HCG26 C6orf136 TRIM26 HLA-E HLA-B PRR3 ZNRD1 PPP1R11 TCF19 GTF2H4 LOC102725068 LINC00243 HLA-L MICA HCG20 TRIM31-AS1 TRIM39 TRIM40 DPCR1 TRIM31 IER3 MDC1-AS1 TRIM15 PPP1R10 PSORS1C1 SFTA2 C6orf15 TRIM39-RPP21 CCHCR1 PSORS1C3 HCG22 PSORS1C2 TRIM10 MIR6891 ZNRD1ASP TUBB RNF39 MIR4640 DHX16 MUC22 POU5F1 RPP21 HLA-C FLOT1 ATAT1 MUC21

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More Information


Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

translation elongation factor

Gene Ontology Categories:

Function(s) Process(es)


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