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See other SYNGAP1 CNV Assays ›
Gene Symbol
SYNGAP1
Assay Reference Genome
Location

Chr.6:33428746 on build GRCh38
Cytoband
6p21.32
Assay ID Hs06145957_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 8831

Gene Name:

 synaptic Ras GTPase activating protein 1

Gene Aliases:

 MRD5, RASA1, RASA5, SYNGAP

Location:

 Chr.6:33420070-33453689 on Build GRCh38

Assay Gene Location:

 Within Intron 3
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SYNGAP1 NM_006772.2 NP_006763.2
AK094225.1
AK124666.1
AK307888.1
DA057307.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv830637 Chr.6:33361588 - 33542927 on Build GRCh38 Loss ZBTB9 MIR5004 CUTA PHF1 SYNGAP1 KIFC1
nsv830635 Chr.6:33270228 - 33446010 on Build GRCh38 Loss RGL2 MIR6834 B3GALT4 VPS52 RPS18 MIR6873 DAXX PFDN6 SYNGAP1 KIFC1 WDR46 ZBTB22 MIR5004 TAPBP CUTA PHF1
nsv1073969 Chr.6:31456422 - 33480523 on Build GRCh38 Deletion CSNK2B NELFE HLA-DRB1 SNORD52 CLIC1 MIR3135B C2 AGPAT1 SAPCD1-AS1 MIR6834 MIR6833 HLA-DMA LY6G6C LY6G6F SNORD48 DAXX SNORD84 C6orf25 RXRB HSPA1L C6orf10 STK19 HSD17B8 TAPBP LY6G5C APOM C6orf47 COL11A2 PSMB8 VPS52 PRRT1 SLC39A7 DDAH2 LTA LOC101929163 PSMB8-AS1 PFDN6 KIFC1 HCG24 TNF C2-AS1 LOC100294145 LST1 HLA-DQB1-AS1 ATP6V1G2-DDX39B DDX39B PRRC2A AIF1 HLA-DPB2 RGL2 AGER PSMB9 CFB HCP5 LSM2 CYP21A2 C4A HLA-DMB EHMT2 WDR46 ABHD16A MIR4646 HLA-DRB5 NOTCH4 LOC100287329 TAP1 NEU1 CUTA MCCD1 HSPA1A HLA-DPA1 MSH5-SAPCD1 BRD2 B3GALT4 RPS18 MIR6873 LOC100507547 ZBTB22 PPT2-EGFL8 GPANK1 SNORD117 MIR6721 BTNL2 PBX2 C4B TAP2 HCG23 MSH5 LY6G5B LY6G6D RNF5 MIR219A1 VARS PPP1R2P1 FKBPL SNORA38 DDX39B-AS1 HLA-DQA1 SLC44A4 HLA-DQB2 HLA-DQB1 HLA-DOB MIR6832 LOC102725068 EGFL8 C6orf48 NFKBIL1 HLA-DQA2 HCG25 HCG26 SYNGAP1 PPT2 TNXB SKIV2L NCR3 ZBTB9 BAG6 HLA-DRA MIR1236 HLA-DRB6 ATF6B HLA-DPB1 ATP6V1G2 PHF1 ZBTB12 HSPA1B HLA-DOA CYP21A1P LY6G6E RING1 VWA7 MICB LTB SAPCD1 MIR5004 TNXA GPSM3 DXO
nsv1112900 Chr.6:31455323 - 33480423 on Build GRCh38 Deletion CSNK2B NELFE HLA-DRB1 SNORD52 CLIC1 MIR3135B C2 AGPAT1 SAPCD1-AS1 MIR6834 MIR6833 HLA-DMA LY6G6C LY6G6F SNORD48 DAXX SNORD84 C6orf25 RXRB HSPA1L C6orf10 STK19 HSD17B8 TAPBP LY6G5C APOM C6orf47 COL11A2 PSMB8 VPS52 PRRT1 SLC39A7 DDAH2 LTA LOC101929163 PSMB8-AS1 PFDN6 KIFC1 HCG24 TNF C2-AS1 LOC100294145 LST1 HLA-DQB1-AS1 ATP6V1G2-DDX39B DDX39B PRRC2A AIF1 HLA-DPB2 RGL2 AGER PSMB9 CFB HCP5 LSM2 CYP21A2 C4A HLA-DMB EHMT2 WDR46 ABHD16A MIR4646 HLA-DRB5 NOTCH4 LOC100287329 TAP1 NEU1 CUTA MCCD1 HSPA1A HLA-DPA1 MSH5-SAPCD1 BRD2 B3GALT4 RPS18 MIR6873 LOC100507547 ZBTB22 PPT2-EGFL8 GPANK1 SNORD117 MIR6721 BTNL2 PBX2 C4B TAP2 HCG23 MSH5 LY6G5B LY6G6D RNF5 MIR219A1 VARS PPP1R2P1 FKBPL SNORA38 DDX39B-AS1 HLA-DQA1 SLC44A4 HLA-DQB2 HLA-DQB1 HLA-DOB MIR6832 LOC102725068 EGFL8 C6orf48 NFKBIL1 HLA-DQA2 HCG25 HCG26 SYNGAP1 PPT2 TNXB SKIV2L NCR3 ZBTB9 BAG6 HLA-DRA MIR1236 HLA-DRB6 ATF6B HLA-DPB1 ATP6V1G2 PHF1 ZBTB12 HSPA1B HLA-DOA CYP21A1P LY6G6E RING1 VWA7 MICB LTB SAPCD1 MIR5004 TNXA GPSM3 DXO
nsv602832 Chr.6:33414464 - 33552444 on Build GRCh38 Loss ZBTB9 MIR5004 CUTA PHF1 SYNGAP1
nsv1119076 Chr.6:32595823 - 33480623 on Build GRCh38 Deletion B3GALT4 VPS52 SLC39A7 RPS18 HLA-DQA2 MIR6873 PSMB8-AS1 HCG25 PFDN6 SYNGAP1 KIFC1 HCG24 ZBTB9 ZBTB22 LOC100294145 HLA-DPB1 HLA-DQB1-AS1 MIR3135B PHF1 HLA-DOA HLA-DPB2 RGL2 MIR6834 TAP2 RING1 PSMB9 HLA-DMA DAXX RXRB HLA-DMB MIR219A1 WDR46 PPP1R2P1 MIR5004 HSD17B8 TAPBP TAP1 HLA-DQA1 HLA-DQB2 CUTA HLA-DQB1 COL11A2 HLA-DPA1 PSMB8 HLA-DOB BRD2

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