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See other HLA-E CNV Assays ›
Gene Symbol
HLA-E
Assay Reference Genome
Location

Chr.6:30493416 on build GRCh38
Cytoband
6p22.1
Assay ID Hs06148725_cn
Size
Availability Made To Order
Catalog # 4400291
Price 475.00
Your Price
Online offer: 441.65
441.65
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Assay Details

Target Gene Details

Entrez Gene ID:

 3133

Gene Name:

 major histocompatibility complex, class I, E

Gene Aliases:

 EA1.2, EA2.1, HLA-6.2, MHC, QA1

Location:

 Chr.6:30489406-30494205 on Build GRCh38

Assay Gene Location:

 Within Exon 5
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
HLA-E NM_005516.5 8 1873 NP_005507.3
XM_017010807.1 7 1885 XP_016866296.1
XM_017010808.1 6 2050 XP_016866297.1
XM_017010809.1 6 2039 XP_016866298.1
AB209870.1 8 1740 BAD93107.1
X56841.1 5 1034 CAA40172.1
X64879.1 5 917 CAA46098.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv1074389 Chr.6:29116522 - 31446623 on Build GRCh38 Deletion MDC1 HCG9 ABCF1 ATAT1 HCG27 RPP21 HCG4B TRIM10 LOC101929006 TRIM31 DPCR1 PPP1R10 HCG18 MUC22 NRM IER3 PPP1R11 HCG22 LOC554223 MUC21 MIR6891 TRIM39 HLA-F C6orf15 MRPS18B HLA-G OR5V1 TRIM31-AS1 CCHCR1 HLA-A TRIM15 DHX16 HLA-H PRR3 IFITM4P SNORD32B SFTA2 GNL1 ZFP57 MIR4640 PSORS1C1 HCG4 MICA PPP1R18 MAS1L RNF39 FLOT1 HLA-C TRIM39-RPP21 HLA-K LINC00243 HLA-L ZNRD1 UBD OR10C1 VARS2 HLA-J OR14J1 OR11A1 GTF2H4 LINC01015 TUBB TCF19 MIR877 C6orf136 OR12D2 OR2J2 MOG HLA-F-AS1 HLA-E HLA-B DDR1 OR12D3 ZNRD1ASP OR2H2 MDC1-AS1 PSORS1C2 TRIM26 POU5F1 HCG17 GABBR1 LOC105375014 HCG20 PSORS1C3 OR2H1 CDSN HCG8 TRIM40
nsv601481 Chr.6:30454855 - 31316476 on Build GRCh38 Loss MDC1 SFTA2 ABCF1 GNL1 MIR4640 PSORS1C1 ATAT1 HCG27 PPP1R18 FLOT1 HLA-C DPCR1 PPP1R10 LINC00243 MUC22 NRM IER3 VARS2 HCG22 MUC21 GTF2H4 TUBB TCF19 MIR877 C6orf136 C6orf15 MRPS18B HLA-E DDR1 MDC1-AS1 PSORS1C2 POU5F1 CCHCR1 LOC105375014 HCG20 PSORS1C3 DHX16 CDSN PRR3
nsv1122126 Chr.6:28628023 - 31244023 on Build GRCh38 Deletion MDC1 HCG9 ABCF1 LOC100129636 ATAT1 HCG27 RPP21 HCG4B TRIM10 LOC101929006 TRIM31 DPCR1 PPP1R10 HCG16 HCG18 MUC22 NRM IER3 PPP1R11 HCG22 LOC554223 MUC21 TRIM39 ZNF311 HLA-F C6orf15 MRPS18B HLA-G OR5V1 LINC01556 TRIM31-AS1 CCHCR1 TRIM27 HLA-A TRIM15 DHX16 HLA-H PRR3 IFITM4P SNORD32B OR2B3 SFTA2 GNL1 ZFP57 MIR4640 PSORS1C1 HCG4 PPP1R18 MAS1L RNF39 FLOT1 TRIM39-RPP21 HLA-K LINC00243 HLA-L ZNRD1 UBD LINC01623 OR10C1 VARS2 OR2W1 HLA-J OR14J1 OR11A1 GTF2H4 LINC01015 TUBB TCF19 MIR877 HCG14 C6orf136 OR12D2 OR2J2 MOG HLA-F-AS1 HLA-E DDR1 OR12D3 ZNRD1ASP OR2H2 MDC1-AS1 PSORS1C2 LINC00533 TRIM26 POU5F1 HCG17 GABBR1 OR2J3 LOC105375014 HCG20 PSORS1C3 OR2H1 CDSN HCG8 TRIM40
nsv1144137 Chr.6:29720323 - 31338123 on Build GRCh38 Deletion MDC1 HCG9 ABCF1 ATAT1 HCG27 RPP21 HCG4B TRIM10 TRIM31 DPCR1 PPP1R10 HCG18 MUC22 NRM IER3 PPP1R11 HCG22 LOC554223 MUC21 TRIM39 HLA-F C6orf15 MRPS18B HLA-G TRIM31-AS1 CCHCR1 HLA-A TRIM15 DHX16 HLA-H PRR3 IFITM4P SFTA2 GNL1 MIR4640 PSORS1C1 HCG4 PPP1R18 RNF39 FLOT1 HLA-C TRIM39-RPP21 HLA-K LINC00243 HLA-L ZNRD1 VARS2 HLA-J GTF2H4 TUBB TCF19 MIR877 C6orf136 HLA-F-AS1 HLA-E DDR1 ZNRD1ASP MDC1-AS1 PSORS1C2 TRIM26 POU5F1 HCG17 LOC105375014 HCG20 PSORS1C3 CDSN HCG8 TRIM40
esv2731791 Chr.6:30404802 - 31346410 on Build GRCh38 Deletion MDC1 SFTA2 ABCF1 GNL1 MIR4640 PSORS1C1 ATAT1 HCG27 PPP1R18 FLOT1 HLA-C DPCR1 PPP1R10 LINC00243 MUC22 NRM IER3 VARS2 HCG22 MUC21 GTF2H4 TUBB TCF19 MIR877 C6orf136 C6orf15 MRPS18B HLA-E DDR1 MDC1-AS1 PSORS1C2 POU5F1 CCHCR1 LOC105375014 HCG20 PSORS1C3 DHX16 CDSN PRR3
nsv601264 Chr.6:29883666 - 31320716 on Build GRCh38 Loss MDC1 HCG9 ABCF1 ATAT1 HCG27 RPP21 HCG4B TRIM10 TRIM31 DPCR1 PPP1R10 HCG18 MUC22 NRM IER3 PPP1R11 HCG22 MUC21 TRIM39 C6orf15 MRPS18B TRIM31-AS1 CCHCR1 HLA-A TRIM15 DHX16 HLA-H PRR3 SFTA2 GNL1 MIR4640 PSORS1C1 PPP1R18 RNF39 FLOT1 HLA-C TRIM39-RPP21 HLA-K LINC00243 HLA-L ZNRD1 VARS2 HLA-J GTF2H4 TUBB TCF19 MIR877 C6orf136 HLA-E DDR1 ZNRD1ASP MDC1-AS1 PSORS1C2 TRIM26 POU5F1 HCG17 LOC105375014 HCG20 PSORS1C3 CDSN HCG8 TRIM40
esv3411275 Chr.6:29981607 - 31490616 on Build GRCh38 Duplication MDC1 ABCF1 ATAT1 HCG27 RPP21 TRIM10 TRIM31 DPCR1 PPP1R10 HCG18 MUC22 NRM IER3 PPP1R11 HCG22 MUC21 MIR6891 TRIM39 C6orf15 MRPS18B TRIM31-AS1 CCHCR1 HCP5 TRIM15 DHX16 PRR3 SFTA2 GNL1 MIR4640 PSORS1C1 MICA HCG26 PPP1R18 RNF39 FLOT1 HLA-C TRIM39-RPP21 LINC00243 HLA-L ZNRD1 VARS2 HLA-J GTF2H4 TUBB TCF19 MIR877 C6orf136 LOC102725068 HLA-E HLA-B DDR1 ZNRD1ASP MDC1-AS1 PSORS1C2 TRIM26 POU5F1 HCG17 LOC105375014 HCG20 PSORS1C3 CDSN HCG8 TRIM40

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More Information


Set Membership:

 Intragenic Exonic DGV Variation

Panther Classification:

Gene Ontology Categories:

Function(s) Process(es)


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