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See other LSM2 CNV Assays ›
Gene Symbol
LSM2
Assay Reference Genome
Location

Chr.6:31799830 on build GRCh38
Cytoband
6p21.33
Assay ID Hs06152272_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 57819

Gene Name:

 LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated

Gene Aliases:

 C6orf28, G7B, YBL026W, snRNP

Location:

 Chr.6:31797392-31806984 on Build GRCh38

Assay Gene Location:

 Within Intron 2
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
LSM2 NM_021177.4 NP_067000.1
AF136977.1 AAG49438.1
AF182288.1 AAD56226.1
AF196468.1 AAG33023.1
AJ245416.1 CAB52190.1
BC009192.2 AAH09192.1
BP203102.1
BU189898.1
CR542146.1 CAG46943.1
CR542157.1 CAG46954.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv1126749 Chr.6:31457323 - 32594423 on Build GRCh38 Deletion MIR6833 MIR4646 MICB ATP6V1G2-DDX39B HCP5 HCG23 VARS SNORA38 FKBPL SNORD117 PRRT1 HCG26 LY6G6D SAPCD1 EGFL8 LY6G6F TNF MSH5-SAPCD1 MCCD1 C4B HSPA1A PPT2-EGFL8 LOC100287329 LST1 RNF5 CLIC1 CYP21A1P LOC102725068 HLA-DRB1 LY6G6E EHMT2 C2-AS1 C2 CYP21A2 APOM TNXA NFKBIL1 C6orf47 MIR1236 SAPCD1-AS1 LY6G6C HLA-DRA SNORD84 NEU1 LOC100507547 AGER DDX39B-AS1 SNORD52 DDX39B SKIV2L LSM2 STK19 MIR6832 ZBTB12 TNXB MIR6721 HLA-DRB5 C6orf10 LTA NCR3 ABHD16A VWA7 BAG6 HSPA1L GPANK1 ATF6B LOC101929163 DDAH2 C4A AIF1 C6orf48 NOTCH4 DXO CFB ATP6V1G2 GPSM3 BTNL2 C6orf25 PRRC2A LY6G5C PPT2 MSH5 SLC44A4 SNORD48 PBX2 LTB CSNK2B LY6G5B HLA-DRB6 NELFE AGPAT1 HSPA1B
nsv1073969 Chr.6:31456422 - 33480523 on Build GRCh38 Deletion MIR6833 MIR4646 MICB HCP5 VARS SNORD117 PRRT1 HCG25 SAPCD1 EGFL8 LY6G6F MCCD1 PPT2-EGFL8 LST1 RNF5 CLIC1 B3GALT4 HLA-DQB1-AS1 MIR3135B HLA-DRB1 LY6G6E C2 ZBTB9 CYP21A2 HCG24 APOM VPS52 NFKBIL1 HLA-DOA C6orf47 MIR1236 HSD17B8 HLA-DMA LOC100507547 AGER DDX39B-AS1 MIR219A1 DDX39B BRD2 MIR6832 ZBTB12 TNXB HLA-DPB2 MIR6721 HLA-DRB5 LTA ABHD16A PSMB9 GPANK1 ATF6B LOC101929163 C4A PFDN6 PHF1 CFB ATP6V1G2 GPSM3 HLA-DQB1 C6orf25 SYNGAP1 PRRC2A ZBTB22 PSMB8 PPT2 RING1 SLC44A4 SNORD48 TAP1 LTB HLA-DRB6 RXRB HSPA1B SLC39A7 ATP6V1G2-DDX39B RGL2 HCG23 SNORA38 FKBPL HCG26 LY6G6D MIR5004 HLA-DQB2 CUTA TNF COL11A2 MSH5-SAPCD1 C4B HSPA1A LOC100287329 CYP21A1P LOC102725068 EHMT2 C2-AS1 TNXA HLA-DPA1 SAPCD1-AS1 MIR6834 PPP1R2P1 LY6G6C HLA-DRA SNORD84 RPS18 NEU1 HLA-DQA1 SNORD52 WDR46 SKIV2L TAP2 LSM2 STK19 TAPBP C6orf10 NCR3 KIFC1 HLA-DQA2 VWA7 BAG6 HSPA1L DDAH2 LOC100294145 AIF1 C6orf48 NOTCH4 HLA-DMB DXO DAXX BTNL2 HLA-DOB PSMB8-AS1 LY6G5C HLA-DPB1 MSH5 PBX2 MIR6873 CSNK2B LY6G5B NELFE AGPAT1
dgv10403n54 Chr.6:31312324 - 32049763 on Build GRCh38 Loss MIR4646 MICB ATP6V1G2-DDX39B HCP5 VARS SNORA38 SNORD117 HCG26 LY6G6D SAPCD1 LY6G6F TNF HLA-B MSH5-SAPCD1 MCCD1 C4B HSPA1A LOC100287329 LST1 CLIC1 CYP21A1P LOC102725068 LY6G6E EHMT2 C2-AS1 C2 CYP21A2 APOM TNXA NFKBIL1 C6orf47 MIR1236 SAPCD1-AS1 LY6G6C SNORD84 NEU1 DDX39B-AS1 MIR6891 SNORD52 DDX39B SKIV2L LSM2 STK19 MIR6832 ZBTB12 TNXB LTA NCR3 ABHD16A VWA7 BAG6 HSPA1L GPANK1 DDAH2 C4A AIF1 MICA C6orf48 DXO CFB ATP6V1G2 C6orf25 PRRC2A LY6G5C MSH5 SLC44A4 SNORD48 LTB CSNK2B LY6G5B NELFE HSPA1B
nsv1112900 Chr.6:31455323 - 33480423 on Build GRCh38 Deletion MIR6833 MIR4646 MICB HCP5 VARS SNORD117 PRRT1 HCG25 SAPCD1 EGFL8 LY6G6F MCCD1 PPT2-EGFL8 LST1 RNF5 CLIC1 B3GALT4 HLA-DQB1-AS1 MIR3135B HLA-DRB1 LY6G6E C2 ZBTB9 CYP21A2 HCG24 APOM VPS52 NFKBIL1 HLA-DOA C6orf47 MIR1236 HSD17B8 HLA-DMA LOC100507547 AGER DDX39B-AS1 MIR219A1 DDX39B BRD2 MIR6832 ZBTB12 TNXB HLA-DPB2 MIR6721 HLA-DRB5 LTA ABHD16A PSMB9 GPANK1 ATF6B LOC101929163 C4A PFDN6 PHF1 CFB ATP6V1G2 GPSM3 HLA-DQB1 C6orf25 SYNGAP1 PRRC2A ZBTB22 PSMB8 PPT2 RING1 SLC44A4 SNORD48 TAP1 LTB HLA-DRB6 RXRB HSPA1B SLC39A7 ATP6V1G2-DDX39B RGL2 HCG23 SNORA38 FKBPL HCG26 LY6G6D MIR5004 HLA-DQB2 CUTA TNF COL11A2 MSH5-SAPCD1 C4B HSPA1A LOC100287329 CYP21A1P LOC102725068 EHMT2 C2-AS1 TNXA HLA-DPA1 SAPCD1-AS1 MIR6834 PPP1R2P1 LY6G6C HLA-DRA SNORD84 RPS18 NEU1 HLA-DQA1 SNORD52 WDR46 SKIV2L TAP2 LSM2 STK19 TAPBP C6orf10 NCR3 KIFC1 HLA-DQA2 VWA7 BAG6 HSPA1L DDAH2 LOC100294145 AIF1 C6orf48 NOTCH4 HLA-DMB DXO DAXX BTNL2 HLA-DOB PSMB8-AS1 LY6G5C HLA-DPB1 MSH5 PBX2 MIR6873 CSNK2B LY6G5B NELFE AGPAT1
dgv10404n54 Chr.6:31312550 - 32516591 on Build GRCh38 Loss MIR6833 MIR4646 MICB ATP6V1G2-DDX39B HCP5 HCG23 VARS SNORA38 FKBPL SNORD117 PRRT1 HCG26 LY6G6D SAPCD1 EGFL8 LY6G6F TNF HLA-B MSH5-SAPCD1 MCCD1 C4B HSPA1A PPT2-EGFL8 LOC100287329 LST1 RNF5 CLIC1 CYP21A1P LOC102725068 LY6G6E EHMT2 C2-AS1 C2 CYP21A2 APOM TNXA NFKBIL1 C6orf47 MIR1236 SAPCD1-AS1 LY6G6C HLA-DRA SNORD84 NEU1 LOC100507547 AGER DDX39B-AS1 MIR6891 SNORD52 DDX39B SKIV2L LSM2 STK19 MIR6832 ZBTB12 TNXB MIR6721 C6orf10 LTA NCR3 ABHD16A VWA7 BAG6 HSPA1L GPANK1 ATF6B LOC101929163 DDAH2 C4A AIF1 MICA C6orf48 NOTCH4 DXO CFB ATP6V1G2 GPSM3 BTNL2 C6orf25 PRRC2A LY6G5C PPT2 MSH5 SLC44A4 SNORD48 PBX2 LTB CSNK2B LY6G5B NELFE AGPAT1 HSPA1B

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