Hs06279236_cn

• Gene Symbol: STIP1
• Assay Reference Genome Location: Chr.11:64200681 on build GRCh38
• Cytoband: 11q13.1

Target Gene Details

• Entrez Gene ID: 10963
• Gene Name: stress induced phosphoprotein 1
• Gene Aliases: HEL-S-94n, HOP, IEF-SSP-3521, P60, STI1, STI1L
• Location: Chr.11:64185272-64204548 on Build GRCh38
• Assay Gene Location: Within Intron 11

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
STIP1	NM_001282652.1			NP_001269581.1
	NM_001282653.1			NP_001269582.1
	NM_006819.2			NP_006810.1
	AK291555.1
	AK297319.1
	BC002987.1			AAH02987.1
	BC039299.1			AAH39299.1
	BT020010.1			AAV38813.1
	BT020011.1			AAV38814.1
	CR536512.1			CAG38750.1
	FJ224350.1
	M86752.1			AAA58682.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv1159904	Chr.11:64150129 - 64279169 on Build GRCh38	Deletion	PPP1R14B LOC105369340 MACROD1 DNAJC4 PLCB3 NUDT22 STIP1 VEGFB FERMT3 BAD FKBP2 TRPT1 GPR137
nsv951010	Chr.11:63942829 - 64352128 on Build GRCh38	Deletion	PPP1R14B MACROD1 COX8A NUDT22 OTUB1 NAA40 CCDC88B BAD FKBP2 ESRRA LOC105369340 KCNK4 TEX40 PRDX5 MIR7155 DNAJC4 PLCB3 STIP1 TRMT112 VEGFB FERMT3 FLRT1 KCNK4-TEX40 TRPT1 GPR137
dgv1963n54	Chr.11:64174262 - 64329761 on Build GRCh38	Loss	PPP1R14B LOC105369340 KCNK4 TEX40 PRDX5 DNAJC4 PLCB3 NUDT22 STIP1 TRMT112 VEGFB FERMT3 BAD FKBP2 KCNK4-TEX40 TRPT1 ESRRA GPR137
nsv555187	Chr.11:64185649 - 64260416 on Build GRCh38	Loss	NUDT22 PPP1R14B STIP1 LOC105369340 VEGFB FERMT3 DNAJC4 FKBP2 TRPT1 PLCB3
nsv555184	Chr.11:64156974 - 64275525 on Build GRCh38	Loss	PPP1R14B LOC105369340 MACROD1 DNAJC4 PLCB3 NUDT22 STIP1 VEGFB FERMT3 BAD FKBP2 TRPT1 GPR137
nsv469961	Chr.11:64055468 - 64318495 on Build GRCh38	Loss	PPP1R14B LOC105369340 KCNK4 TEX40 MACROD1 PRDX5 DNAJC4 PLCB3 NUDT22 STIP1 TRMT112 VEGFB FERMT3 BAD FLRT1 FKBP2 KCNK4-TEX40 TRPT1 ESRRA GPR137

More Information

Additional Information:

For this assay, SNP(s) [rs73500139] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

response to stress

Function(s)

protein binding
protein C-terminus binding
Hsp70 protein binding
poly(A) RNA binding
chaperone binding