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See other CASP5 CNV Assays ›
Gene Symbol
CASP5
Assay Reference Genome
Location

Chr.11:105010146 on build GRCh38
Cytoband
11q22.3
Assay ID Hs06305515_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 838

Gene Name:

 caspase 5

Gene Aliases:

 ICE(rel)III, ICEREL-III, ICH-3

Location:

 Chr.11:104994240-105023902 on Build GRCh38

Assay Gene Location:

 Within Intron 1
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
CASP5 NM_001136109.1 NP_001129581.1
NM_001136110.1 NP_001129582.1
NM_001136112.1 NP_001129584.1
NM_004347.3 NP_004338.3
NR_024239.1
NR_036562.1
XM_011543021.2 XP_011541323.1
AK296660.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv556219 Chr.11:105004534 - 105047790 on Build GRCh38 Loss CARD16 CASP5 CASP1
nsv1052674 Chr.11:104111970 - 107043401 on Build GRCh38 Loss CARD16 CASP5 CASP12 KBTBD3 MSANTD4 CASP1 LOC102723895 GUCY1A2 CARD17 PDGFD CARD18 LOC101928535 CASP4 LOC643733 AASDHPPT LOC105369473 MIR7641-1 CASP1P2 GRIA4
esv2750978 Chr.11:104094062 - 105475331 on Build GRCh38 Gain CARD16 CASP4 CASP5 CASP12 LOC643733 CASP1 LOC102723895 CARD17 PDGFD MIR7641-1 CASP1P2 CARD18
nsv1046098 Chr.11:104336482 - 105132934 on Build GRCh38 Loss CARD16 CASP4 CASP5 CASP12 LOC643733 CASP1 LOC102723895 CARD17 CASP1P2
nsv1041081 Chr.11:104927048 - 105041731 on Build GRCh38 Loss CARD16 CASP4 CASP5 CASP1
nsv468862 Chr.11:104903287 - 105372644 on Build GRCh38 Gain CARD16 CASP4 CASP5 LOC643733 CASP1 CARD17 CASP1P2 CARD18
nsv1038877 Chr.11:104166130 - 105422422 on Build GRCh38 Gain CARD16 CASP4 CASP5 CASP12 LOC643733 CASP1 LOC102723895 CARD17 MIR7641-1 CASP1P2 CARD18

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More Information


Additional Information:

For this assay, SNP(s) [rs76840823] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

protease

Gene Ontology Categories:

Function(s) Process(es)


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