Hs06339396_cn

• Gene Symbol: HOXC13
• Assay Reference Genome Location: Chr.12:53940218 on build GRCh38
• Cytoband: 12q13.13

Target Gene Details

• Entrez Gene ID: 3229
• Gene Name: homeobox C13
• Gene Aliases: ECTD9, HOX3, HOX3G
• Location: Chr.12:53938792-53946544 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
HOXC13	NM_017410.2			NP_059106.2
	AF255676.1			AAF67760.1
	AF263466.2			AAF73439.1
	AK024027.1			BAB14786.1
	BC090850.1			AAH90850.1
	BT009908.1			AAP88910.1
	BU158600.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv826379	Chr.12:53935085 - 54056069 on Build GRCh38	Gain	HOXC-AS3 HOXC-AS2 HOXC13-AS HOXC9 HOXC5 HOXC11 HOXC-AS1 HOXC12 HOXC4 LOC107984512 HOXC10 HOTAIR MIR615 HOXC6 MIR196A2 HOXC8 HOXC13

More Information

Additional Information:

For this assay, SNP(s) [rs79833984] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

hair follicle development
transcription from RNA polymerase II promoter
anatomical structure morphogenesis
anterior/posterior pattern specification
nail development
tongue morphogenesis
positive regulation of transcription from RNA polymerase II promoter

Function(s)

transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
chromatin binding
protein binding
sequence-specific DNA binding