Hs06417042_cn

• Gene Symbol: RAB40B
• Assay Reference Genome Location: Chr.17:82667720 on build GRCh38
• Cytoband: 17q25.3

Target Gene Details

• Entrez Gene ID: 10966
• Gene Name: RAB40B, member RAS oncogene family
• Gene Aliases: RAR, SEC4L
• Location: Chr.17:82657067-82698722 on Build GRCh38
• Assay Gene Location: Within Intron 4

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
RAB40B	NM_006822.2			NP_006813.1
	XM_005256334.4			XP_005256391.1
	XM_005256335.3			XP_005256392.1
	XM_006722271.3			XP_006722334.1
	XM_011523528.2			XP_011521830.1
	XM_017024042.1			XP_016879531.1
	AB209711.1			BAD92948.1
	AL047483.1
	BC018039.1			AAH18039.1
	U05227.1			AAA17031.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv1067553	Chr.17:82530808 - 83091923 on Build GRCh38	Loss	LOC105376791 FN3K FOXK2 FN3KRP ZNF750 RAB40B WDR45B LOC101929552 METRNL MIR4525 B3GNTL1 TBCD LOC105371944
nsv833575	Chr.17:82660876 - 82847512 on Build GRCh38	Loss	FN3KRP LOC105376791 ZNF750 FN3K RAB40B LOC101929552 MIR4525 TBCD
nsv952395	Chr.17:82663725 - 82745024 on Build GRCh38	Deletion	FN3KRP LOC105376791 FN3K RAB40B LOC101929552 MIR4525
nsv1067362	Chr.17:82569201 - 82681793 on Build GRCh38	Gain	FOXK2 RAB40B WDR45B MIR4525
nsv1062980	Chr.17:82408938 - 82687942 on Build GRCh38	Gain	HEXDC C17orf62 FOXK2 NARF RAB40B WDR45B OGFOD3 MIR4525
nsv428351	Chr.17:81152631 - 83064073 on Build GRCh38	Gain	MIR4740 ANAPC11 MCRIP1 TMEM105 SIRT7 OXLD1 FASN MIR6786 LOC100130370 GPS1 CD7 UTS2R CEP131 LOC101929552 DCXR LOC105376790 LRRC45 AATK LOC105371944 DUS1L TEX19 SLC16A3 RAC3 TEPSIN BAHCC1 MRPL12 FN3K C17orf89 PCYT2 NOTUM LOC105371925 GCGR HEXDC C17orf62 ARHGDIA NPLOC4 P4HB MAFG-AS1 RAB40B STRA13 ALYREF FAAP100 ARL16 CSNK1D AATK-AS1 ASPSCR1 CCDC57 MYADML2 NARF FSCN2 MAFG RFNG WDR45B TSPAN10 ACTG1 B3GNTL1 TBCD CCDC137 LOC101929511 SLC25A10 LOC105376791 SLC38A10 NPB OGFOD3 SNORD134 MIR3186 PYCR1 LINC00482 FOXK2 FN3KRP ZNF750 HGS MIR4525 SECTM1 PPP1R27 PDE6G MIR6787
nsv509680	Chr.17:82661313 - 82679596 on Build GRCh38	Insertion	RAB40B MIR4525
esv2762577	Chr.17:82244836 - 82838431 on Build GRCh38	Gain+Loss	LOC101929511 TEX19 CSNK1D LOC105376791 FN3K OGFOD3 HEXDC C17orf62 FOXK2 FN3KRP NARF CD7 ZNF750 UTS2R RAB40B WDR45B LOC101929552 LOC105376790 MIR4525 TBCD SECTM1
esv21913	Chr.17:81828123 - 83103548 on Build GRCh38	Gain+Loss	ANAPC11 MCRIP1 SIRT7 FASN GPS1 CD7 UTS2R LOC101929552 DCXR LOC105376790 METRNL LRRC45 LOC105371944 DUS1L TEX19 SLC16A3 RAC3 FN3K PCYT2 NOTUM HEXDC C17orf62 ARHGDIA P4HB MAFG-AS1 RAB40B STRA13 ALYREF CSNK1D ASPSCR1 CCDC57 MYADML2 NARF MAFG RFNG WDR45B B3GNTL1 TBCD LOC101929511 LOC105376791 NPB OGFOD3 SNORD134 PYCR1 FOXK2 FN3KRP ZNF750 MIR4525 SECTM1 PPP1R27 MIR6787

More Information

Additional Information:

For this assay, SNP(s) [rs114898379] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

small GTPase mediated signal transduction
protein ubiquitination
symbiont intracellular protein transport in host

Function(s)

GTP binding