Hs06424669_cn

• Gene Symbol: OR3A1
• Assay Reference Genome Location: Chr.17:3294247 on build GRCh38
• Cytoband: 17p13.3

Target Gene Details

• Entrez Gene ID: 4994
• Gene Name: olfactory receptor family 3 subfamily A member 1
• Gene Aliases: OLFRA03, OR17-40, OR17-82, OR40
• Location: Chr.17:3288318-3336087 on Build GRCh38
• Assay Gene Location: Within Intron 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
OR3A1	XM_017024695.1			XP_016880184.1
	XM_017024696.1			XP_016880185.1

Target Gene Details

• Entrez Gene ID: 4995
• Gene Name: olfactory receptor family 3 subfamily A member 2
• Gene Aliases: OLFRA04, OR17-14, OR17-228, OR228
• Location: Chr.17:3276113-3386311 on Build GRCh38
• Assay Gene Location: Within Intron 3

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
OR3A2	XM_017024697.1			XP_016880186.1
	XM_017024698.1			XP_016880187.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
esv3892950	Chr.17:3131812 - 3577153 on Build GRCh38	Loss	TRPV1 TRPV3 OR1D4 SPATA22 OR3A1 OR1E1 OR3A2 OR3A4P OR3A3 ASPA OR1A2 OR1E2 OR1A1
nsv1065489	Chr.17:2631416 - 3948349 on Build GRCh38	Gain	TRPV1 ATP2A3 OR1D4 OR1D5 P2RX1 SPATA22 EMC6 OR1D2 MIR1253 CCDC92B ITGAE SHPK P2RX5 OR3A4P CLUH MIR6776 OR1E2 TAX1BP3 P2RX5-TAX1BP3 TRPV3 LOC105371591 OR3A1 CAMKK1 GSG2 OR1E1 LOC101927911 OR1G1 OR3A2 NCBP3 RAP1GAP2 OR3A3 PAFAH1B1 ASPA CTNS OR1A2 OR1A1 LOC105371592
nsv574232	Chr.17:3254715 - 3503170 on Build GRCh38	Gain	SPATA22 OR3A1 OR3A2 OR3A4P OR3A3 OR1E1 ASPA OR1E2
esv2660206	Chr.17:2679367 - 3519614 on Build GRCh38	Deletion	TRPV3 OR1D4 OR1D5 LOC105371591 SPATA22 OR3A1 OR1D2 MIR1253 OR1E1 CCDC92B LOC101927911 OR1G1 OR3A2 OR3A4P RAP1GAP2 OR3A3 PAFAH1B1 ASPA CLUH MIR6776 OR1A2 OR1E2 OR1A1 LOC105371592
esv3892949	Chr.17:3184567 - 3344389 on Build GRCh38	Loss	OR1D4 OR3A1 OR3A2 OR3A4P OR1A2 OR1A1
nsv1060926	Chr.17:3093486 - 3319621 on Build GRCh38	Gain	OR1D4 OR3A1 OR3A2 OR3A4P OR1A2 OR1G1 OR1A1
nsv574235	Chr.17:3287239 - 3318238 on Build GRCh38	Loss	OR3A1 OR3A2 OR3A4P
nsv470570	Chr.17:3278090 - 3317250 on Build GRCh38	Gain	OR3A1 OR3A2 OR3A4P

More Information

Additional Information:

For this assay, SNP(s) [rs77354201] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

G-protein coupled receptor, transmembrane signal receptor

Gene Ontology Categories:

Process(es)

signal transduction
G-protein coupled receptor signaling pathway
detection of chemical stimulus involved in sensory perception of smell
sensory perception of chemical stimulus

Function(s)

G-protein coupled receptor activity
olfactory receptor activity
receptor activity