Hs06611938_cn

• Gene Symbol: SHISA5
• Assay Reference Genome Location: Chr.3:48476630 on build GRCh38
• Cytoband: 3p21.31

Target Gene Details

• Entrez Gene ID: 51246
• Gene Name: shisa family member 5
• Gene Aliases: SCOTIN
• Location: Chr.3:48467798-48504826 on Build GRCh38
• Assay Gene Location: Within Intron 6

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
SHISA5	NM_001272065.1			NP_001258994.1
	NM_001272066.1			NP_001258995.1
	NM_001272067.1			NP_001258996.1
	NM_001272068.1			NP_001258997.1
	NM_016479.4			NP_057563.3
	XM_005265205.1			XP_005265262.1
	XM_006713188.2			XP_006713251.1
	XM_011533796.1			XP_011532098.1
	AF520698.1			AAM74232.1
	AK056328.1			BAB71152.1
	AK075441.1			BAC11623.1
	AK124652.1
	AK301191.1
	BI552637.1
	BX336842.2
	BX344125.2
	BX379507.2
	DA025113.1
	DA045437.1
	DA657994.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv834684	Chr.3:48344209 - 48551890 on Build GRCh38	Gain	ATRIP PFKFB4 MIR6823 CCDC51 TREX1 FBXW12 TMA7 PLXNB1 SHISA5
nsv3809	Chr.3:48474359 - 48502729 on Build GRCh38	Insertion	SHISA5
dgv8315n54	Chr.3:48464432 - 48478412 on Build GRCh38	Loss	ATRIP TREX1 SHISA5
nsv590242	Chr.3:48392157 - 48518906 on Build GRCh38	Loss	ATRIP PFKFB4 CCDC51 TREX1 FBXW12 TMA7 PLXNB1 SHISA5
nsv508917	Chr.3:48400224 - 48499357 on Build GRCh38	Insertion	ATRIP CCDC51 TREX1 TMA7 PLXNB1 SHISA5

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

scaffold/adaptor protein

Gene Ontology Categories:

Process(es)

intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator
positive regulation of I-kappaB kinase/NF-kappaB signaling

Function(s)

signal transducer activity
protein binding