Hs06632313_cn

• Gene Symbol: LOC105377135
• Assay Reference Genome Location: Chr.3:53013423 on build GRCh38
• Cytoband: 3p21.1

Target Gene Details

• Entrez Gene ID: 105377135
• Gene Name: transcription initiation factor TFIID subunit 4-like
• Gene Aliases: -
• Location: Chr.3:52999045-53048252 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
LOC105377135	XM_011534353.2			XP_011532655.1

Target Gene Details

• Entrez Gene ID: 51460
• Gene Name: Scm-like with four mbt domains 1
• Gene Aliases: RU1, SFMBT, hSFMBT
• Location: Chr.3:52899209-53046655 on Build GRCh38
• Assay Gene Location: Within Intron 4

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
SFMBT1	NM_016329.3			NP_057413.2
	XM_005265221.3			XP_005265278.1
	XM_006713203.3			XP_006713266.1
	XM_006713204.3			XP_006713267.1
	XM_011533824.2			XP_011532126.1
	XM_011533825.2			XP_011532127.1
	AF168132.1			AAF19794.1
	AK313965.1
	BC014614.2			AAH14614.1
	BG717319.1
	BG723139.1
	BU553665.1
	CR981845.1
	DB064119.1
	DB070525.1
	DB081417.1
	DB085221.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
esv2672563	Chr.3:53012592 - 53013817 on Build GRCh38	Deletion	SFMBT1 LOC105377135
nsv1160941	Chr.3:52989195 - 53019618 on Build GRCh38	Deletion	SFMBT1 LOC105377135
nsv1000733	Chr.3:52997708 - 53019629 on Build GRCh38	Gain	SFMBT1 LOC105377135
nsv437713	Chr.3:52992698 - 53021506 on Build GRCh38	Loss	SFMBT1 LOC105377135
nsv3823	Chr.3:52969643 - 53017047 on Build GRCh38	Deletion	SFMBT1 LOC105377135
esv22089	Chr.3:53012721 - 53013514 on Build GRCh38	Loss	SFMBT1 LOC105377135
dgv8331n54	Chr.3:52993967 - 53028645 on Build GRCh38	Loss	SFMBT1 LOC105377135
esv3596165	Chr.3:53012572 - 53013781 on Build GRCh38	Loss	SFMBT1 LOC105377135
esv2489889	Chr.3:53011771 - 53014315 on Build GRCh38	Deletion	SFMBT1 LOC105377135

More Information

Additional Information:

For this assay, SNP(s) [rs79139223] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

chromatin/chromatin-binding, or -regulatory protein

Gene Ontology Categories:

Process(es)

transcription, DNA-templated
spermatogenesis
covalent chromatin modification
cell differentiation
negative regulation of transcription, DNA-templated
negative regulation of muscle organ development

Function(s)

transcription corepressor activity
protein binding
histone binding