Assay Details

Target Gene Details

Entrez Gene ID:	491
Gene Name:	ATPase plasma membrane Ca2+ transporting 2
Gene Aliases:	PMCA2, PMCA2a, PMCA2i
Location:	Chr.3:10324023-10707962 on Build GRCh38
Assay Gene Location:	Within Intron 31

Gene Symbol	Transcript Accession	Protein ID
ATP2B2	NM_001001331.2	NP_001001331.1
	NM_001683.3	NP_001674.2
	XM_005265179.4	XP_005265236.1
	XM_006713175.3	XP_006713238.1
	XM_011533752.2	XP_011532054.1
	XM_017006481.1	XP_016861970.1
	XM_017006482.1	XP_016861971.1
	XM_017006483.1	XP_016861972.1
	XM_017006484.1	XP_016861973.1
	XM_017006485.1	XP_016861974.1
	XM_017006486.1	XP_016861975.1
	XM_017006487.1	XP_016861976.1
	XM_017006488.1	XP_016861977.1
	XM_017006489.1	XP_016861978.1
	XM_017006490.1	XP_016861979.1
	XM_017006491.1	XP_016861980.1
	XM_017006492.1	XP_016861981.1
	AB210008.1
	DQ201777.1
	DQ201778.1
	L00620.1	AAA51893.1
	L20977.1	AAA50877.1
	M97260.1	AAA36456.1
	S95758.1	AAA08376.1
	U15688.1	AAA60985.1
	X63575.1	CAA45131.1

Target Copy Number Variation Details

DGV Version:

Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv436362	Chr.3:10048344 - 11860564 on Build GRCh38	Deletion	LINC00852 ATP2B2-IT2 SEC13 MIR378B ATP2B2 HRH1 TAMM41 SLC6A1 GHRL GHRLOS SLC6A1-AS1 FANCD2 LINC00606 MIR885 VGLL4 ATG7 FANCD2OS IRAK2 LOC101927467 TATDN2 VHL SLC6A11 BRK1
nsv508903	Chr.3:10275353 - 10401894 on Build GRCh38	Insertion	LINC00852 MIR885 SEC13 MIR378B ATP2B2 TATDN2 GHRL GHRLOS
dgv762e201	Chr.3:10008967 - 11913136 on Build GRCh38	Deletion	LINC00852 SEC13 EMC3 HRH1 LOC401052 TAMM41 SLC6A1 GHRL LINC00606 MIR885 CIDECP VGLL4 IRAK2 LOC101927467 TATDN2 VHL BRK1 ATP2B2-IT2 MIR378B ATP2B2 FANCD2P2 GHRLOS SLC6A1-AS1 FANCD2 ATG7 FANCD2OS SLC6A11
nsv1121603	Chr.3:10071433 - 11889279 on Build GRCh38	Deletion	LINC00852 ATP2B2-IT2 SEC13 MIR378B ATP2B2 HRH1 FANCD2P2 TAMM41 SLC6A1 GHRL GHRLOS SLC6A1-AS1 FANCD2 LINC00606 MIR885 VGLL4 ATG7 FANCD2OS IRAK2 LOC101927467 TATDN2 VHL SLC6A11 BRK1
nsv436869	Chr.3:10064456 - 11877985 on Build GRCh38	Insertion	LINC00852 ATP2B2-IT2 SEC13 MIR378B ATP2B2 HRH1 FANCD2P2 TAMM41 SLC6A1 GHRL GHRLOS SLC6A1-AS1 FANCD2 LINC00606 MIR885 VGLL4 ATG7 FANCD2OS IRAK2 LOC101927467 TATDN2 VHL SLC6A11 BRK1
nsv1073204	Chr.3:9996548 - 11875005 on Build GRCh38	Deletion	LINC00852 SEC13 EMC3 HRH1 LOC401052 TAMM41 SLC6A1 GHRL LINC00606 MIR885 CIDECP VGLL4 IRAK2 LOC101927467 TATDN2 VHL BRK1 ATP2B2-IT2 MIR378B ATP2B2 FANCD2P2 GHRLOS SLC6A1-AS1 FANCD2 ATG7 FANCD2OS EMC3-AS1 SLC6A11

More Information

Additional Information:

For this assay, SNP(s) [rs73127658] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

Intragenic

Intronic

Non-exonic

DGV Variation

Panther Classification:

Molecular Function -

primary active transporter

Gene Ontology Categories:

Function(s) Process(es)

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System Message

Genomic Map

Assay Details

Target Gene Details

Entrez Gene ID:

Gene Name:

Gene Aliases:

Location:

Assay Gene Location: