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See other HLA-DPA1 CNV Assays ›
Gene Symbol
HLA-DPA1
Assay Reference Genome
Location

Chr.6:33075464 on build GRCh38
Cytoband
6p21.32
Assay ID Hs06736925_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 3113

Gene Name:

 major histocompatibility complex, class II, DP alpha 1

Gene Aliases:

 DP(W3), DP(W4), HLA-DP1A, HLADP, HLASB, PLT1

Location:

 Chr.6:33064569-33080778 on Build GRCh38

Assay Gene Location:

 Within Intron 1
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
HLA-DPA1 NM_001242524.1 NP_001229453.1
NM_001242525.1 NP_001229454.1
BI553587.1
CD516536.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv823645 Chr.6:33061191 - 33091364 on Build GRCh38 Loss HLA-DPB1 HLA-DPA1
esv2731879 Chr.6:33065144 - 33107309 on Build GRCh38 Deletion HLA-DPB1 HLA-DPA1
nsv1024429 Chr.6:32997190 - 33154554 on Build GRCh38 Loss HCG24 HLA-DPB2 HLA-DOA HLA-DPB1 HLA-DPA1
esv1006913 Chr.6:33064893 - 33088398 on Build GRCh38 Gain HLA-DPB1 HLA-DPA1
nsv1073969 Chr.6:31456422 - 33480523 on Build GRCh38 Deletion HCG23 SKIV2L C4B TAPBP APOM TNF HCP5 HSPA1L MIR5004 PHF1 CUTA DAXX HLA-DRA SYNGAP1 CYP21A2 STK19 ZBTB12 SNORA38 MCCD1 SLC39A7 BRD2 CLIC1 SAPCD1 PPT2-EGFL8 NOTCH4 AGPAT1 HSD17B8 DDAH2 HLA-DQB2 GPANK1 ZBTB22 ATF6B DDX39B DXO MIR6873 WDR46 HCG26 VWA7 HLA-DOA RING1 B3GALT4 HLA-DMB EGFL8 TNXA HCG24 HCG25 HLA-DPB2 PSMB8 HLA-DQA2 SAPCD1-AS1 NEU1 MIR6834 MSH5 HLA-DRB5 DDX39B-AS1 C6orf10 EHMT2 VPS52 MIR3135B HLA-DPA1 ZBTB9 HLA-DRB1 C6orf25 NCR3 LTB MIR6721 MICB HLA-DQB1 HLA-DMA NFKBIL1 ATP6V1G2-DDX39B RGL2 SLC44A4 LY6G5C PPT2 LST1 KIFC1 AIF1 LY6G5B MSH5-SAPCD1 C4A TAP2 LOC100507547 C2-AS1 GPSM3 HSPA1B PFDN6 LY6G6C C2 LY6G6D HLA-DPB1 VARS MIR4646 FKBPL MIR6832 LOC100294145 COL11A2 ATP6V1G2 TAP1 LSM2 CYP21A1P LY6G6F RNF5 HLA-DOB NELFE C6orf47 SNORD52 TNXB CFB BTNL2 C6orf48 LOC102725068 SNORD117 MIR1236 LOC100287329 SNORD48 HLA-DQB1-AS1 MIR6833 HSPA1A LTA HLA-DQA1 PRRC2A AGER PPP1R2P1 PRRT1 BAG6 PBX2 RPS18 PSMB9 MIR219A1 SNORD84 ABHD16A HLA-DRB6 LY6G6E RXRB LOC101929163 PSMB8-AS1 CSNK2B
nsv1112900 Chr.6:31455323 - 33480423 on Build GRCh38 Deletion HCG23 SKIV2L C4B TAPBP APOM TNF HCP5 HSPA1L MIR5004 PHF1 CUTA DAXX HLA-DRA SYNGAP1 CYP21A2 STK19 ZBTB12 SNORA38 MCCD1 SLC39A7 BRD2 CLIC1 SAPCD1 PPT2-EGFL8 NOTCH4 AGPAT1 HSD17B8 DDAH2 HLA-DQB2 GPANK1 ZBTB22 ATF6B DDX39B DXO MIR6873 WDR46 HCG26 VWA7 HLA-DOA RING1 B3GALT4 HLA-DMB EGFL8 TNXA HCG24 HCG25 HLA-DPB2 PSMB8 HLA-DQA2 SAPCD1-AS1 NEU1 MIR6834 MSH5 HLA-DRB5 DDX39B-AS1 C6orf10 EHMT2 VPS52 MIR3135B HLA-DPA1 ZBTB9 HLA-DRB1 C6orf25 NCR3 LTB MIR6721 MICB HLA-DQB1 HLA-DMA NFKBIL1 ATP6V1G2-DDX39B RGL2 SLC44A4 LY6G5C PPT2 LST1 KIFC1 AIF1 LY6G5B MSH5-SAPCD1 C4A TAP2 LOC100507547 C2-AS1 GPSM3 HSPA1B PFDN6 LY6G6C C2 LY6G6D HLA-DPB1 VARS MIR4646 FKBPL MIR6832 LOC100294145 COL11A2 ATP6V1G2 TAP1 LSM2 CYP21A1P LY6G6F RNF5 HLA-DOB NELFE C6orf47 SNORD52 TNXB CFB BTNL2 C6orf48 LOC102725068 SNORD117 MIR1236 LOC100287329 SNORD48 HLA-DQB1-AS1 MIR6833 HSPA1A LTA HLA-DQA1 PRRC2A AGER PPP1R2P1 PRRT1 BAG6 PBX2 RPS18 PSMB9 MIR219A1 SNORD84 ABHD16A HLA-DRB6 LY6G6E RXRB LOC101929163 PSMB8-AS1 CSNK2B
esv22467 Chr.6:33055021 - 33087568 on Build GRCh38 Loss HLA-DPB1 HLA-DPA1
nsv602818 Chr.6:32998165 - 33150041 on Build GRCh38 Loss HCG24 HLA-DPB2 HLA-DOA HLA-DPB1 HLA-DPA1
nsv1119076 Chr.6:32595823 - 33480623 on Build GRCh38 Deletion HCG24 HCG25 HLA-DPB2 TAPBP RGL2 MIR5004 PHF1 PSMB8 KIFC1 CUTA TAP2 DAXX HLA-DQA2 SYNGAP1 HLA-DQB1-AS1 PFDN6 MIR6834 SLC39A7 HLA-DPB1 BRD2 HLA-DQA1 PPP1R2P1 HSD17B8 HLA-DQB2 RPS18 LOC100294145 ZBTB22 PSMB9 VPS52 MIR3135B MIR219A1 COL11A2 TAP1 MIR6873 HLA-DPA1 ZBTB9 WDR46 RXRB HLA-DOB PSMB8-AS1 HLA-DOA RING1 HLA-DQB1 B3GALT4 HLA-DMB HLA-DMA

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