Hs06795101_cn

• Gene Symbol: SSR1
• Assay Reference Genome Location: Chr.6:7282152 on build GRCh38
• Cytoband: 6p24.3

Target Gene Details

• Entrez Gene ID: 6745
• Gene Name: signal sequence receptor subunit 1
• Gene Aliases: TRAPA
• Location: Chr.6:7281143-7313314 on Build GRCh38
• Assay Gene Location: Within Exon 8

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
SSR1	NM_001292008.1	8	8563	NP_001278937.1
	NM_003144.4	8	8767	NP_003135.2
	NR_120448.1	7	8688
	AK026687.1	1	898

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv1029748	Chr.6:7271371 - 7310026 on Build GRCh38	Gain	SSR1
nsv462623	Chr.6:7278096 - 7546171 on Build GRCh38	Gain	LOC101928076 CAGE1 DSP RIOK1 SSR1
esv3890787	Chr.6:6996928 - 7981438 on Build GRCh38	Loss	LOC101928076 CAGE1 DSP BMP6 TXNDC5 SNRNP48 BLOC1S5-TXNDC5 RIOK1 SSR1 RREB1
nsv981350	Chr.6:7277821 - 7548705 on Build GRCh38	Duplication	LOC101928076 CAGE1 DSP RIOK1 SSR1

More Information

Additional Information:

For this assay, SNP(s) [rs76345703] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Exonic, DGV Variation

Panther Classification:

Molecular Function -

membrane traffic protein

Gene Ontology Categories:

Process(es)

cotranslational protein targeting to membrane
positive regulation of cell proliferation
IRE1-mediated unfolded protein response

Function(s)

protein binding