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See other SYNGAP1 CNV Assays ›
Gene Symbol
SYNGAP1
Assay Reference Genome
Location

Chr.6:33427631 on build GRCh38
Cytoband
6p21.32
Assay ID Hs06810225_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 8831

Gene Name:

 synaptic Ras GTPase activating protein 1

Gene Aliases:

 MRD5, RASA1, RASA5, SYNGAP

Location:

 Chr.6:33420070-33453689 on Build GRCh38

Assay Gene Location:

 Within Intron 3
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SYNGAP1 NM_006772.2 NP_006763.2
AK094225.1
AK307888.1
DA057307.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv830637 Chr.6:33361588 - 33542927 on Build GRCh38 Loss SYNGAP1 KIFC1 PHF1 ZBTB9 MIR5004 CUTA
nsv830635 Chr.6:33270228 - 33446010 on Build GRCh38 Loss SYNGAP1 KIFC1 PHF1 RGL2 MIR5004 RPS18 B3GALT4 PFDN6 MIR6834 MIR6873 VPS52 CUTA ZBTB22 DAXX WDR46 TAPBP
nsv1073969 Chr.6:31456422 - 33480523 on Build GRCh38 Deletion SYNGAP1 SLC39A7 PSMB9 LY6G6D FKBPL RPS18 CFB VARS HCG26 C6orf10 HLA-DOB HCG25 AGER LST1 CUTA CYP21A2 HLA-DRB6 HLA-DMA HLA-DPA1 RNF5 HCG24 HLA-DQA1 HLA-DQA2 GPANK1 MICB SKIV2L BRD2 ATP6V1G2 LY6G5B LOC101929163 PRRC2A ZBTB12 HLA-DOA TNXB RING1 KIFC1 CYP21A1P SNORD84 PFDN6 HLA-DQB2 HSD17B8 EGFL8 LY6G6E AIF1 LY6G6F C6orf48 PSMB8 HLA-DRB5 SNORD48 NEU1 C4B SNORA38 DDAH2 NFKBIL1 C2 DDX39B CLIC1 HSPA1A ZBTB9 SLC44A4 B3GALT4 SNORD52 HLA-DRB1 MSH5-SAPCD1 MIR219A1 HLA-DRA HCG23 PPT2-EGFL8 SNORD117 NCR3 HLA-DMB HLA-DQB1 TNF DXO C2-AS1 GPSM3 LOC102725068 ABHD16A C6orf25 COL11A2 MSH5 VPS52 DAXX LSM2 BAG6 MIR6833 C6orf47 RGL2 LOC100507547 MIR5004 ATP6V1G2-DDX39B MIR4646 TAP2 PPT2 TAP1 PSMB8-AS1 PBX2 HLA-DPB1 HLA-DPB2 NOTCH4 TNXA LTB STK19 LOC100287329 SAPCD1 TAPBP LY6G6C PRRT1 APOM MIR6832 C4A MIR3135B HCP5 SAPCD1-AS1 MIR6721 MIR6834 LY6G5C HSPA1L ZBTB22 PPP1R2P1 LOC100294145 DDX39B-AS1 WDR46 ATF6B LTA BTNL2 MIR1236 PHF1 VWA7 AGPAT1 NELFE HSPA1B CSNK2B EHMT2 RXRB MCCD1 MIR6873 HLA-DQB1-AS1
nsv1112900 Chr.6:31455323 - 33480423 on Build GRCh38 Deletion SYNGAP1 SLC39A7 PSMB9 LY6G6D FKBPL RPS18 CFB VARS HCG26 C6orf10 HLA-DOB HCG25 AGER LST1 CUTA CYP21A2 HLA-DRB6 HLA-DMA HLA-DPA1 RNF5 HCG24 HLA-DQA1 HLA-DQA2 GPANK1 MICB SKIV2L BRD2 ATP6V1G2 LY6G5B LOC101929163 PRRC2A ZBTB12 HLA-DOA TNXB RING1 KIFC1 CYP21A1P SNORD84 PFDN6 HLA-DQB2 HSD17B8 EGFL8 LY6G6E AIF1 LY6G6F C6orf48 PSMB8 HLA-DRB5 SNORD48 NEU1 C4B SNORA38 DDAH2 NFKBIL1 C2 DDX39B CLIC1 HSPA1A ZBTB9 SLC44A4 B3GALT4 SNORD52 HLA-DRB1 MSH5-SAPCD1 MIR219A1 HLA-DRA HCG23 PPT2-EGFL8 SNORD117 NCR3 HLA-DMB HLA-DQB1 TNF DXO C2-AS1 GPSM3 LOC102725068 ABHD16A C6orf25 COL11A2 MSH5 VPS52 DAXX LSM2 BAG6 MIR6833 C6orf47 RGL2 LOC100507547 MIR5004 ATP6V1G2-DDX39B MIR4646 TAP2 PPT2 TAP1 PSMB8-AS1 PBX2 HLA-DPB1 HLA-DPB2 NOTCH4 TNXA LTB STK19 LOC100287329 SAPCD1 TAPBP LY6G6C PRRT1 APOM MIR6832 C4A MIR3135B HCP5 SAPCD1-AS1 MIR6721 MIR6834 LY6G5C HSPA1L ZBTB22 PPP1R2P1 LOC100294145 DDX39B-AS1 WDR46 ATF6B LTA BTNL2 MIR1236 PHF1 VWA7 AGPAT1 NELFE HSPA1B CSNK2B EHMT2 RXRB MCCD1 MIR6873 HLA-DQB1-AS1
nsv602832 Chr.6:33414464 - 33552444 on Build GRCh38 Loss SYNGAP1 PHF1 ZBTB9 MIR5004 CUTA
nsv1119076 Chr.6:32595823 - 33480623 on Build GRCh38 Deletion SYNGAP1 RING1 KIFC1 SLC39A7 PSMB9 HLA-DMB MIR3135B HLA-DQB1 RPS18 PFDN6 HLA-DQB2 HSD17B8 HLA-DOB HCG25 PSMB8 MIR6834 COL11A2 VPS52 CUTA ZBTB22 DAXX PPP1R2P1 LOC100294145 WDR46 HLA-DMA HLA-DPA1 HCG24 PHF1 HLA-DQA1 ZBTB9 RGL2 MIR5004 B3GALT4 TAP2 HLA-DQA2 TAP1 PSMB8-AS1 RXRB BRD2 HLA-DPB1 HLA-DPB2 MIR6873 MIR219A1 HLA-DQB1-AS1 HLA-DOA TAPBP

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