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See other SYNGAP1 CNV Assays ›
Gene Symbol
SYNGAP1
Assay Reference Genome
Location

Chr.6:33426498 on build GRCh38
Cytoband
6p21.32
Assay ID Hs06815495_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 8831

Gene Name:

 synaptic Ras GTPase activating protein 1

Gene Aliases:

 MRD5, RASA1, RASA5, SYNGAP

Location:

 Chr.6:33420070-33453689 on Build GRCh38

Assay Gene Location:

 Within Intron 3
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SYNGAP1 NM_006772.2 NP_006763.2
AK094225.1
AK307888.1
DA057307.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv830637 Chr.6:33361588 - 33542927 on Build GRCh38 Loss MIR5004 SYNGAP1 PHF1 KIFC1 ZBTB9 CUTA
nsv830635 Chr.6:33270228 - 33446010 on Build GRCh38 Loss TAPBP MIR6873 MIR5004 ZBTB22 MIR6834 KIFC1 B3GALT4 RPS18 DAXX SYNGAP1 PHF1 WDR46 VPS52 CUTA PFDN6 RGL2
nsv1073969 Chr.6:31456422 - 33480523 on Build GRCh38 Deletion C2-AS1 VARS MIR4646 HCG23 MIR6873 ZBTB22 SAPCD1-AS1 PSMB9 LY6G5B TNXA DDX39B RING1 HLA-DMB ABHD16A LSM2 DAXX DDX39B-AS1 HCG24 LTA NELFE MIR6833 NOTCH4 RGL2 HCP5 LOC101929163 HLA-DPB1 EGFL8 MICB SNORD117 MIR219A1 BAG6 C6orf10 HSPA1A LY6G6C HCG26 ZBTB12 TAP2 SLC44A4 SNORD52 HLA-DQB2 AGPAT1 HLA-DRA RXRB EHMT2 AIF1 MCCD1 C2 MSH5-SAPCD1 PSMB8-AS1 PBX2 GPSM3 MIR3135B TNF LOC100294145 HLA-DQB1-AS1 ATP6V1G2-DDX39B C4A B3GALT4 MSH5 HSPA1L CYP21A1P HLA-DRB5 COL11A2 LY6G6E CYP21A2 MIR6721 DDAH2 SYNGAP1 VPS52 PPT2-EGFL8 SLC39A7 TAPBP FKBPL MIR6834 SNORD84 PSMB8 TNXB KIFC1 PRRC2A TAP1 MIR1236 BRD2 HCG25 C4B LOC102725068 NEU1 HLA-DRB6 LY6G5C LY6G6F NFKBIL1 LTB SAPCD1 CFB RNF5 PRRT1 STK19 BTNL2 HSPA1B CSNK2B ATP6V1G2 PHF1 WDR46 HLA-DOA SNORD48 LST1 NCR3 APOM ZBTB9 HLA-DOB DXO CLIC1 LOC100507547 MIR6832 PPT2 GPANK1 C6orf48 SKIV2L HLA-DMA HSD17B8 PFDN6 C6orf25 AGER MIR5004 ATF6B C6orf47 SNORA38 LY6G6D HLA-DRB1 HLA-DQB1 HLA-DPA1 LOC100287329 RPS18 HLA-DQA1 PPP1R2P1 HLA-DPB2 CUTA VWA7 HLA-DQA2
nsv1112900 Chr.6:31455323 - 33480423 on Build GRCh38 Deletion C2-AS1 VARS MIR4646 HCG23 MIR6873 ZBTB22 SAPCD1-AS1 PSMB9 LY6G5B TNXA DDX39B RING1 HLA-DMB ABHD16A LSM2 DAXX DDX39B-AS1 HCG24 LTA NELFE MIR6833 NOTCH4 RGL2 HCP5 LOC101929163 HLA-DPB1 EGFL8 MICB SNORD117 MIR219A1 BAG6 C6orf10 HSPA1A LY6G6C HCG26 ZBTB12 TAP2 SLC44A4 SNORD52 HLA-DQB2 AGPAT1 HLA-DRA RXRB EHMT2 AIF1 MCCD1 C2 MSH5-SAPCD1 PSMB8-AS1 PBX2 GPSM3 MIR3135B TNF LOC100294145 HLA-DQB1-AS1 ATP6V1G2-DDX39B C4A B3GALT4 MSH5 HSPA1L CYP21A1P HLA-DRB5 COL11A2 LY6G6E CYP21A2 MIR6721 DDAH2 SYNGAP1 VPS52 PPT2-EGFL8 SLC39A7 TAPBP FKBPL MIR6834 SNORD84 PSMB8 TNXB KIFC1 PRRC2A TAP1 MIR1236 BRD2 HCG25 C4B LOC102725068 NEU1 HLA-DRB6 LY6G5C LY6G6F NFKBIL1 LTB SAPCD1 CFB RNF5 PRRT1 STK19 BTNL2 HSPA1B CSNK2B ATP6V1G2 PHF1 WDR46 HLA-DOA SNORD48 LST1 NCR3 APOM ZBTB9 HLA-DOB DXO CLIC1 LOC100507547 MIR6832 PPT2 GPANK1 C6orf48 SKIV2L HLA-DMA HSD17B8 PFDN6 C6orf25 AGER MIR5004 ATF6B C6orf47 SNORA38 LY6G6D HLA-DRB1 HLA-DQB1 HLA-DPA1 LOC100287329 RPS18 HLA-DQA1 PPP1R2P1 HLA-DPB2 CUTA VWA7 HLA-DQA2
nsv602832 Chr.6:33414464 - 33552444 on Build GRCh38 Loss MIR5004 SYNGAP1 PHF1 ZBTB9 CUTA
nsv1119076 Chr.6:32595823 - 33480623 on Build GRCh38 Deletion HLA-DQB2 SLC39A7 TAPBP MIR6873 RXRB ZBTB22 MIR6834 PSMB9 PSMB8 KIFC1 RING1 TAP1 HLA-DMB BRD2 PSMB8-AS1 HCG25 DAXX HCG24 HLA-DMA MIR3135B HSD17B8 LOC100294145 HLA-DQB1-AS1 PFDN6 RGL2 MIR5004 HLA-DPB1 MIR219A1 B3GALT4 HLA-DQB1 HLA-DPA1 COL11A2 RPS18 HLA-DQA1 TAP2 SYNGAP1 PHF1 WDR46 VPS52 PPP1R2P1 HLA-DOA HLA-DPB2 ZBTB9 CUTA HLA-DOB HLA-DQA2

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