Hs07055956_cn

• Gene Symbol: VSX2
• Assay Reference Genome Location: Chr.14:74256566 on build GRCh38
• Cytoband: 14q24.3

Target Gene Details

• Entrez Gene ID: 338917
• Gene Name: visual system homeobox 2
• Gene Aliases: CHX10, HOX10, MCOP2, MCOPCB3, RET1
• Location: Chr.14:74239472-74262738 on Build GRCh38
• Assay Gene Location: Within Intron 3

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
VSX2	NM_182894.2			NP_878314.1
	AY336059.1			AAQ01593.1
	BC128153.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv565182	Chr.14:74220714 - 74299190 on Build GRCh38	Loss	ABCD4 VSX2

More Information

Additional Information:

For this assay, SNP(s) [rs111798789] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

helix-turn-helix transcription factor, homeodomain transcription factor, DNA-binding transcription factor, gene-specific transcriptional regulator

Gene Ontology Categories:

Process(es)

transcription, DNA-templated
regulation of transcription, DNA-templated
multicellular organism development
visual perception
response to stimulus

Function(s)

sequence-specific DNA binding