Hs07128143_cn

• Gene Symbol: SLC6A16
• Assay Reference Genome Location: Chr.19:49295700 on build GRCh38
• Cytoband: 19q13.33

Target Gene Details

• Entrez Gene ID: 28968
• Gene Name: solute carrier family 6 member 16
• Gene Aliases: NT5, NTT5
• Location: Chr.19:49289632-49332320 on Build GRCh38
• Assay Gene Location: Within Intron 11

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
SLC6A16	NM_014037.2			NP_054756.2
	XM_005258820.2			XP_005258877.1
	XM_006723168.3			XP_006723231.1
	XM_011526859.2			XP_011525161.2
	XM_011526860.2			XP_011525162.1
	XM_011526861.2			XP_011525163.1
	XM_017026712.1			XP_016882201.1
	AF151977.1			AAD38044.1
	AF265578.1			AAG41362.1
	AL136856.1			CAB66790.1
	BC034948.1			AAH34948.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv9739	Chr.19:47901840 - 50143063 on Build GRCh38	Gain+Loss	FUT2 SNAR-A6 LOC105447645 SIGLEC16 MIR6800 TEAD2 KCNA7 ADM5 BAX FCGRT PTOV1 SNAR-A4 C19orf68 HSD17B14 LOC101928295 C19orf73 ZNF114 SNORD35A TULP2 SNAR-D AP2A1 PLA2G4C-AS1 MIR4751 SNAR-G1 SNAR-A13 SNAR-A5 GRWD1 RRAS SCAF1 SNAR-C4 SNORD35B SYNGR4 ATF5 SLC6A16 CARD8 GYS1 CPT1C MIR6799 VRK3 PNKP AKT1S1 DBP SNAR-A14 LIN7B TMEM143 RASIP1 NTN5 FUT1 ALDH16A1 CGB7 FLT3LG SNAR-A10 FAM83E SNORD34 NTF4 SEC1P SNRNP70 MIR5088 DKKL1 PPFIA3 SULT2B1 SPHK2 PLA2G4C CCDC114 MIR150 SNAR-A9 SNAR-A11 RPL13A CGB5 EMP3 CA11 KDELR1 SNAR-C1 FGF21 PRRG2 LOC105372430 PTH2 PRMT1 SNAR-C3 DHDH SNAR-C5 GRIN2D IZUMO1 ELSPBP1 MIR4750 CGB1 MIR4324 IRF3 CYTH2 SNAR-C2 LIG1 SNAR-A1 SPACA4 TSKS HRC SNORD33 CARD8-AS1 RCN3 SNORD32A GFY SNAR-G2 MIR6798 LOC100287477 BCAT2 NUCB1-AS1 LMTK3 SIGLEC11 TRPM4 SLC17A7 RPL18 SNAR-B2 IL4I1 SNAR-B1 FUZ SNAR-A7 CGB2 PTOV1-AS2 SNAR-A3 RPS11 PRR12 LOC101059948 KCNJ14 PTOV1-AS1 SNAR-A8 CCDC155 FLJ26850 PLEKHA4 BSPH1 BCL2L12 MED25 TBC1D17 NOSIP CD37 MIR4749 NUCB1 CGB3 PIH1D1 CGB8 NUP62 PPP1R15A RUVBL2 SNAR-A2 ZNF473 CABP5 SNAR-A12 FTL MAMSTR LHB
esv2658176	Chr.19:49287651 - 49297841 on Build GRCh38	Deletion	SLC6A16
dgv52n68	Chr.19:49286685 - 49456131 on Build GRCh38	Loss	SLC17A7 SLC6A16 DKKL1 GFY CD37 TEAD2 CCDC155 LOC101928295 PIH1D1 ALDH16A1 PTH2 MIR4324
esv3644620	Chr.19:49287578 - 49297780 on Build GRCh38	Loss	SLC6A16

More Information

Additional Information:

For this assay, SNP(s) [rs117097888] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

primary active transporter

Gene Ontology Categories:

Process(es)

amino acid transmembrane transport
neurotransmitter transport

Function(s)

neurotransmitter transporter activity
neurotransmitter:sodium symporter activity
amino acid transmembrane transporter activity