Hs07149189_cn

• Gene Symbol: FUT6
• Assay Reference Genome Location: Chr.19:5835446 on build GRCh38
• Cytoband: 19p13.3

Target Gene Details

• Entrez Gene ID: 2528
• Gene Name: fucosyltransferase 6
• Gene Aliases: FCT3A, FT1A, Fuc-TVI, FucT-VI
• Location: Chr.19:5830626-5839753 on Build GRCh38
• Assay Gene Location: Within Intron 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
FUT6	NM_000150.2			NP_000141.1
	NM_001040701.1			NP_001035791.1
	XM_005259526.4			XP_005259583.1
	XM_005259527.3			XP_005259584.1
	XM_011527868.2			XP_011526170.1
	XM_011527869.2			XP_011526171.1
	XM_011527870.2			XP_011526172.1
	XM_011527872.2			XP_011526174.1
	XM_011527873.2			XP_011526175.1
	XM_011527874.2			XP_011526176.1
	XM_011527875.2			XP_011526177.1
	XM_011527876.2			XP_011526178.1
	XM_011527878.2			XP_011526180.1
	XM_011527879.2			XP_011526181.1
	AF131211.1			AAD33509.1
	AK098073.1
	AK225795.1
	AK313130.1
	BC061700.1			AAH61700.1
	DA426469.1
	U27333.1			AAC50192.1
	U27334.1			AAC50193.1
	U27335.1			AAC50194.1
	U27336.1			AAC50195.1
	U27337.1			AAC50196.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
esv3893160	Chr.19:5827086 - 5839735 on Build GRCh38	Loss	NRTN FUT6
esv3643541	Chr.19:5831170 - 5844611 on Build GRCh38	Loss	FUT3 FUT6
nsv1062851	Chr.19:5531540 - 5893590 on Build GRCh38	Gain	DUS3L PRR22 HSD11B1L SAFB2 FUT5 TINCR SAFB LOC107985320 LONP1 NRTN FUT3 LOC101928844 FUT6 CATSPERD NDUFA11 RPL36 C19orf70

More Information

Additional Information:

For this assay, SNP(s) [rs114914894] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

glycosyltransferase

Gene Ontology Categories:

Process(es)

protein glycosylation
protein N-linked glycosylation
fucosylation
L-fucose catabolic process

Function(s)

fucosyltransferase activity
3-galactosyl-N-acetylglucosaminide 4-alpha-L-fucosyltransferase activity
alpha-(1->3)-fucosyltransferase activity