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See other NKD2 CNV Assays ›
Gene Symbol
NKD2
Assay Reference Genome
Location

Chr.5:1028116 on build GRCh38
Cytoband
5p15.33
Assay ID Hs07542932_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 85409

Gene Name:

 naked cuticle homolog 2

Gene Aliases:

 Naked2

Location:

 Chr.5:1008845-1038812 on Build GRCh38

Assay Gene Location:

 Within Intron 3
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
NKD2 NM_001271082.1 NP_001258011.1
NM_033120.3 NP_149111.1
XM_005248382.3 XP_005248439.1
XM_005248383.3 XP_005248440.1
XM_011514150.2 XP_011512452.1
AB062887.1 BAB70501.1
AF358137.1 AAK57486.1
BC012176.1 AAH12176.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv3894110 Chr.5:1023940 - 1044424 on Build GRCh38 Loss NKD2
esv27512 Chr.5:1001602 - 1049278 on Build GRCh38 Gain+Loss NKD2
esv3894109 Chr.5:988113 - 1228100 on Build GRCh38 Gain SLC12A7 SLC6A18 NKD2 LOC100506688 MIR4635 CTD-3080P12.3 SLC6A19
esv2759316 Chr.5:620048 - 1161361 on Build GRCh38 Gain+Loss SLC12A7 ZDHHC11B BRD9 NKD2 LOC100506688 TRIP13 LOC101929895 TPPP MIR4635 ZDHHC11 CEP72
dgv9522n54 Chr.5:1009968 - 1190946 on Build GRCh38 Loss SLC12A7 NKD2 MIR4635 CTD-3080P12.3
nsv596629 Chr.5:457146 - 1468172 on Build GRCh38 Gain MIR4457 EXOC3 ZDHHC11 SLC12A7 LOC100996325 LOC101929895 CLPTM1L MIR4635 LINC01511 SLC6A19 CEP72 ZDHHC11B SLC6A18 LOC100506688 TRIP13 SLC6A3 SLC9A3 PP7080 MIR4456 BRD9 TERT LOC100288152 NKD2 LPCAT1 TPPP CTD-3080P12.3
nsv822953 Chr.5:1003717 - 1113523 on Build GRCh38 Gain SLC12A7 NKD2 MIR4635
nsv527182 Chr.5:995155 - 1207412 on Build GRCh38 Loss SLC12A7 NKD2 LOC100506688 MIR4635 CTD-3080P12.3 SLC6A19
esv3603788 Chr.5:951987 - 1049107 on Build GRCh38 Loss NKD2 LOC100506688
nsv469577 Chr.5:971392 - 1195577 on Build GRCh38 Loss SLC12A7 NKD2 LOC100506688 MIR4635 CTD-3080P12.3
esv2669088 Chr.5:1000913 - 1049209 on Build GRCh38 Deletion NKD2
esv3603792 Chr.5:1000756 - 1054628 on Build GRCh38 Gain SLC12A7 NKD2
nsv470985 Chr.5:992394 - 1056998 on Build GRCh38 Gain SLC12A7 NKD2 LOC100506688
nsv950627 Chr.5:1008886 - 1300685 on Build GRCh38 Deletion SLC12A7 TERT SLC6A18 NKD2 MIR4635 CTD-3080P12.3 SLC6A19
nsv10654 Chr.5:676170 - 1082573 on Build GRCh38 Gain+Loss SLC12A7 ZDHHC11B BRD9 NKD2 LOC100506688 TRIP13 TPPP MIR4635 ZDHHC11

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More Information


Additional Information:

For this assay, SNP(s) [rs146763732] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Gene Ontology Categories:

Function(s) Process(es)


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