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See other FANCA CNV Assays ›
Gene Symbol
FANCA
Assay Reference Genome
Location

Chr.16:89748708 on build GRCh38
Cytoband
16q24.3
Assay ID Hs00044804_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 2175

Gene Name:

 Fanconi anemia complementation group A

Gene Aliases:

 FA, FA-H, FA1, FAA, FACA, FAH, FANCH

Location:

 Chr.16:89737551-89816658 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 35 - Exon 35
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
FANCA NM_000135.2 NP_000126.2
NM_001286167.1 NP_001273096.1
XM_005256294.4 XP_005256351.1
XM_011522945.2 XP_011521247.1
XM_011522946.2 XP_011521248.1
XM_011522947.2 XP_011521249.1
XM_017023044.1 XP_016878533.1
AK299282.1
AK301168.1
X99226.1 CAA67610.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv573744 Chr.16:89738447 - 89915950 on Build GRCh38 Loss LOC105371419 TCF25 LOC107984817 ZNF276 FANCA SPIRE2
nsv952079 Chr.16:89685593 - 89749492 on Build GRCh38 Deletion CDK10 VPS9D1-AS1 VPS9D1 SPATA2L ZNF276 FANCA
nsv573743 Chr.16:89664419 - 89853617 on Build GRCh38 Gain LOC105371419 CDK10 VPS9D1-AS1 SPATA33 VPS9D1 SPATA2L LOC107984817 ZNF276 FANCA SPIRE2
esv2762221 Chr.16:89610380 - 90039318 on Build GRCh38 Gain+Loss LOC105371419 CENPBD1 DEF8 GAS8 MC1R VPS9D1-AS1 SPATA33 VPS9D1 SPATA2L DBNDD1 ZNF276 FANCA SPIRE2 CDK10 CHMP1A AFG3L1P GAS8-AS1 TUBB3 TCF25 LOC107984817 DPEP1
nsv428331 Chr.16:89216635 - 90185980 on Build GRCh38 Gain+Loss DEF8 LOC105371414 RPL13 FAM157C ZNF778 SPATA2L DBNDD1 ZNF276 FANCA URAHP SNORD68 SPG7 TUBB8P7 TUBB3 ANKRD11 TCF25 LOC105371419 LOC100287036 CENPBD1 GAS8 MC1R VPS9D1-AS1 SPATA33 VPS9D1 SPIRE2 CPNE7 CDK10 CHMP1A AFG3L1P GAS8-AS1 LOC107984817 LOC101927817 PRDM7 DPEP1
nsv833331 Chr.16:89726091 - 89849806 on Build GRCh38 Gain+Loss LOC105371419 LOC107984817 ZNF276 FANCA SPIRE2
nsv482951 Chr.16:88633593 - 90228345 on Build GRCh38 Loss DEF8 LOC105371414 FAM157C PABPN1L MIR4722 ZNF778 DBNDD1 FANCA LOC339059 LOC400558 LOC105371409 SLC22A31 SNORD68 SPG7 CBFA2T3 ANKRD11 TCF25 LOC105371419 LOC100287036 GAS8 VPS9D1-AS1 SNAI3-AS1 SPATA33 CDH15 SPIRE2 CTU2 LOC107987238 CDK10 ACSF3 CHMP1A AFG3L1P LOC107984817 LOC101927817 LINC00304 TRAPPC2L RNF166 GALNS APRT MVD RPL13 SPATA2L LOC101927793 ZNF276 LOC100289580 CDT1 IL17C URAHP TUBB8P7 TUBB3 CENPBD1 MC1R VPS9D1 LOC100129697 PIEZO1 CPNE7 GAS8-AS1 SNAI3 CYBA PRDM7 DPEP1
nsv509639 Chr.16:89513538 - 89775915 on Build GRCh38 Insertion VPS9D1-AS1 RPL13 SPATA33 VPS9D1 SPATA2L ZNF276 FANCA CPNE7 CDK10 SNORD68 SPG7 CHMP1A DPEP1

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