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Gene Symbol
TNXB
Assay Reference Genome
Location

Chr.6:32046261 on build GRCh38
Cytoband
6p21.33
Assay ID Hs00088637_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 7148

Gene Name:

 tenascin XB

Gene Aliases:

 EDS3, HXBL, TENX, TN-X, TNX, TNXB1, TNXB2, TNXBS, VUR8, XB, XBS

Location:

 Chr.6:32041155-32109374 on Build GRCh38

Assay Gene Location:

 Within Exon 31
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
TNXB NM_019105.6 31 10716 NP_061978.6
AB209012.1 2 442 BAD92249.1
BC033740.1 2 293 AAH33740.1
BC071883.1 1 347 AAH71883.1
M25813.1 2 248 AAA35884.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv602045 Chr.6:31996469 - 32046679 on Build GRCh38 Gain C4A CYP21A1P TNXB CYP21A2 TNXA C4B
nsv1112900 Chr.6:31455323 - 33480423 on Build GRCh38 Deletion C6orf25 LY6G6F PBX2 DDAH2 NOTCH4 LOC102725068 C4B MIR6832 MICB HLA-DPB2 HLA-DRB6 ATF6B ZBTB22 DXO SAPCD1 LY6G6C HCG25 RING1 SNORD84 MIR6834 TNXB CFB MIR6833 PRRC2A HLA-DRA LOC100294145 LOC100287329 HLA-DMA APOM CLIC1 DDX39B GPSM3 CYP21A2 PRRT1 SNORD52 PPP1R2P1 TNF TAP1 LOC100507547 MCCD1 VPS52 HLA-DOA HLA-DRB1 NFKBIL1 DAXX LOC101929163 MSH5 HCG24 EGFL8 WDR46 HLA-DOB LY6G5B LY6G5C HLA-DPA1 HCP5 TAPBP ZBTB9 PSMB9 MIR219A1 BRD2 MSH5-SAPCD1 NELFE HLA-DPB1 DDX39B-AS1 HSD17B8 HSPA1B AIF1 KIFC1 HCG23 MIR1236 GPANK1 C2 COL11A2 AGER LST1 BTNL2 RGL2 PSMB8-AS1 SNORA38 C2-AS1 RXRB MIR6721 BAG6 HLA-DQB1 ATP6V1G2 LY6G6E ATP6V1G2-DDX39B AGPAT1 HLA-DQB2 PFDN6 HLA-DQA1 VWA7 PSMB8 STK19 HLA-DQB1-AS1 CUTA PPT2-EGFL8 SLC39A7 HSPA1A MIR6873 LSM2 C6orf10 HSPA1L SLC44A4 FKBPL SNORD48 B3GALT4 PHF1 MIR5004 SNORD117 RPS18 HLA-DMB C4A ZBTB12 LTB SAPCD1-AS1 HCG26 C6orf48 LY6G6D SKIV2L HLA-DQA2 EHMT2 MIR3135B ABHD16A TNXA C6orf47 TAP2 MIR4646 CYP21A1P CSNK2B RNF5 PPT2 NCR3 SYNGAP1 NEU1 LTA VARS HLA-DRB5
dgv10404n54 Chr.6:31312550 - 32516591 on Build GRCh38 Loss C6orf25 LY6G6F PBX2 HCG23 DDAH2 MIR1236 GPANK1 NOTCH4 C2 LOC102725068 C4B AGER MIR6832 LST1 MICB BTNL2 SNORA38 ATF6B DXO C2-AS1 SAPCD1 LY6G6C MIR6721 BAG6 SNORD84 TNXB CFB ATP6V1G2 LY6G6E MIR6833 ATP6V1G2-DDX39B AGPAT1 MICA PRRC2A VWA7 HLA-DRA STK19 LOC100287329 PPT2-EGFL8 HLA-B HSPA1A LSM2 APOM C6orf10 HSPA1L CLIC1 SLC44A4 DDX39B FKBPL SNORD48 GPSM3 CYP21A2 PRRT1 SNORD117 C4A ZBTB12 SNORD52 LTB SAPCD1-AS1 HCG26 C6orf48 LY6G6D TNF SKIV2L EHMT2 LOC100507547 MCCD1 ABHD16A TNXA NFKBIL1 LOC101929163 C6orf47 MSH5 EGFL8 MIR4646 CYP21A1P CSNK2B LY6G5B RNF5 MIR6891 LY6G5C PPT2 NCR3 HCP5 NEU1 LTA MSH5-SAPCD1 NELFE DDX39B-AS1 HSPA1B VARS AIF1
nsv5247 Chr.6:31957962 - 32055439 on Build GRCh38 Deletion C4A SKIV2L STK19 CYP21A1P NELFE TNXB CYP21A2 DXO TNXA C4B
nsv5248 Chr.6:32028238 - 32051635 on Build GRCh38 Insertion TNXB CYP21A2 C4B
nsv285 Chr.6:32009269 - 32055439 on Build GRCh38 Deletion TNXB CYP21A2 TNXA C4B
esv28110 Chr.6:31980130 - 32048749 on Build GRCh38 Gain+Loss C4A STK19 CYP21A1P TNXB CYP21A2 TNXA C4B
dgv10472n54 Chr.6:31985690 - 32812026 on Build GRCh38 Loss C6orf10 PBX2 HCG23 FKBPL GPSM3 NOTCH4 CYP21A2 PRRT1 C4B C4A AGER BTNL2 HLA-DQA2 MIR3135B LOC100507547 HLA-DRB6 ATF6B HLA-DRB1 TNXA LOC101929163 MIR6721 EGFL8 CYP21A1P RNF5 HLA-DQB1 PPT2 TNXB MIR6833 AGPAT1 HLA-DQB2 HLA-DQA1 HLA-DRA HLA-DQB1-AS1 PPT2-EGFL8 HLA-DRB5
nsv601971 Chr.6:31971488 - 32046679 on Build GRCh38 Gain C4A STK19 CYP21A1P TNXB CYP21A2 DXO TNXA C4B
dgv10463n54 Chr.6:31817661 - 32683279 on Build GRCh38 Loss PBX2 HCG23 MIR1236 NOTCH4 C2 C4B AGER BTNL2 HLA-DRB6 ATF6B DXO C2-AS1 MIR6721 HLA-DQB1 TNXB CFB MIR6833 AGPAT1 HLA-DQA1 HLA-DRA STK19 HLA-DQB1-AS1 PPT2-EGFL8 HSPA1A C6orf10 SLC44A4 FKBPL SNORD48 GPSM3 CYP21A2 PRRT1 C4A ZBTB12 SNORD52 C6orf48 SKIV2L EHMT2 LOC100507547 HLA-DRB1 TNXA LOC101929163 EGFL8 CYP21A1P RNF5 PPT2 NEU1 NELFE HSPA1B HLA-DRB5
esv2759415 Chr.6:31903735 - 32241336 on Build GRCh38 Gain+Loss PBX2 MIR1236 FKBPL GPSM3 NOTCH4 CYP21A2 C2 PRRT1 C4B C4A AGER SKIV2L LOC100507547 ATF6B DXO C2-AS1 TNXA MIR6721 EGFL8 CYP21A1P RNF5 PPT2 TNXB CFB MIR6833 AGPAT1 STK19 NELFE PPT2-EGFL8
nsv1126749 Chr.6:31457323 - 32594423 on Build GRCh38 Deletion C6orf25 LY6G6F PBX2 HCG23 DDAH2 MIR1236 GPANK1 NOTCH4 C2 LOC102725068 C4B AGER MIR6832 LST1 MICB BTNL2 SNORA38 HLA-DRB6 ATF6B DXO C2-AS1 SAPCD1 LY6G6C MIR6721 BAG6 SNORD84 TNXB CFB ATP6V1G2 LY6G6E MIR6833 ATP6V1G2-DDX39B AGPAT1 PRRC2A VWA7 HLA-DRA STK19 LOC100287329 PPT2-EGFL8 HSPA1A LSM2 APOM C6orf10 HSPA1L CLIC1 SLC44A4 DDX39B FKBPL SNORD48 GPSM3 CYP21A2 PRRT1 SNORD117 C4A ZBTB12 SNORD52 LTB SAPCD1-AS1 HCG26 C6orf48 LY6G6D TNF SKIV2L EHMT2 LOC100507547 MCCD1 ABHD16A HLA-DRB1 TNXA NFKBIL1 LOC101929163 C6orf47 MSH5 EGFL8 MIR4646 CYP21A1P CSNK2B LY6G5B RNF5 LY6G5C PPT2 NCR3 HCP5 NEU1 LTA MSH5-SAPCD1 NELFE DDX39B-AS1 HSPA1B VARS HLA-DRB5 AIF1
nsv1073969 Chr.6:31456422 - 33480523 on Build GRCh38 Deletion C6orf25 LY6G6F PBX2 DDAH2 NOTCH4 LOC102725068 C4B MIR6832 MICB HLA-DPB2 HLA-DRB6 ATF6B ZBTB22 DXO SAPCD1 LY6G6C HCG25 RING1 SNORD84 MIR6834 TNXB CFB MIR6833 PRRC2A HLA-DRA LOC100294145 LOC100287329 HLA-DMA APOM CLIC1 DDX39B GPSM3 CYP21A2 PRRT1 SNORD52 PPP1R2P1 TNF TAP1 LOC100507547 MCCD1 VPS52 HLA-DOA HLA-DRB1 NFKBIL1 DAXX LOC101929163 MSH5 HCG24 EGFL8 WDR46 HLA-DOB LY6G5B LY6G5C HLA-DPA1 HCP5 TAPBP ZBTB9 PSMB9 MIR219A1 BRD2 MSH5-SAPCD1 NELFE HLA-DPB1 DDX39B-AS1 HSD17B8 HSPA1B AIF1 KIFC1 HCG23 MIR1236 GPANK1 C2 COL11A2 AGER LST1 BTNL2 RGL2 PSMB8-AS1 SNORA38 C2-AS1 RXRB MIR6721 BAG6 HLA-DQB1 ATP6V1G2 LY6G6E ATP6V1G2-DDX39B AGPAT1 HLA-DQB2 PFDN6 HLA-DQA1 VWA7 PSMB8 STK19 HLA-DQB1-AS1 CUTA PPT2-EGFL8 SLC39A7 HSPA1A MIR6873 LSM2 C6orf10 HSPA1L SLC44A4 FKBPL SNORD48 B3GALT4 PHF1 MIR5004 SNORD117 RPS18 HLA-DMB C4A ZBTB12 LTB SAPCD1-AS1 HCG26 C6orf48 LY6G6D SKIV2L HLA-DQA2 EHMT2 MIR3135B ABHD16A TNXA C6orf47 TAP2 MIR4646 CYP21A1P CSNK2B RNF5 PPT2 NCR3 SYNGAP1 NEU1 LTA VARS HLA-DRB5
dgv10403n54 Chr.6:31312324 - 32049763 on Build GRCh38 Loss C6orf25 LY6G6F DDAH2 MIR1236 GPANK1 C2 LOC102725068 C4B MIR6832 LST1 MICB SNORA38 DXO C2-AS1 SAPCD1 LY6G6C BAG6 SNORD84 TNXB CFB ATP6V1G2 LY6G6E ATP6V1G2-DDX39B MICA PRRC2A VWA7 STK19 LOC100287329 HLA-B HSPA1A LSM2 APOM HSPA1L CLIC1 SLC44A4 DDX39B SNORD48 CYP21A2 SNORD117 C4A ZBTB12 SNORD52 LTB SAPCD1-AS1 HCG26 C6orf48 LY6G6D TNF SKIV2L EHMT2 MCCD1 ABHD16A TNXA NFKBIL1 C6orf47 MSH5 MIR4646 CYP21A1P CSNK2B LY6G5B MIR6891 LY6G5C NCR3 HCP5 NEU1 LTA MSH5-SAPCD1 NELFE DDX39B-AS1 HSPA1B VARS AIF1
nsv981129 Chr.6:31980992 - 32057861 on Build GRCh38 Duplication C4A STK19 CYP21A1P TNXB CYP21A2 TNXA C4B
nsv10824 Chr.6:31980357 - 32046247 on Build GRCh38 Gain+Loss C4A STK19 CYP21A1P TNXB CYP21A2 TNXA C4B

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More Information


Additional Information:

For this assay, SNP(s) [rs115065067] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Exonic DGV Variation

Panther Classification:

Molecular Function -

extracellular matrix protein

Gene Ontology Categories:

Function(s) Process(es)


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