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See other FANCA CNV Assays ›
Gene Symbol
FANCA
Assay Reference Genome
Location

Chr.16:89738043 on build GRCh38
Cytoband
16q24.3
Assay ID Hs00131336_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 2175

Gene Name:

 Fanconi anemia complementation group A

Gene Aliases:

 FA, FA-H, FA1, FAA, FACA, FAH, FANCH

Location:

 Chr.16:89737551-89816658 on Build GRCh38

Assay Gene Location:

 Within Exon 44
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
FANCA NM_000135.2 43 4968 NP_000126.2
NM_001286167.1 43 4972 NP_001273096.1
X99226.1 43 4957 CAA67610.1

Target Gene Details

Entrez Gene ID:

 92822

Gene Name:

 zinc finger protein 276

Gene Aliases:

 CENP-Z, CENPZ, ZADT, ZFP276, ZNF477

Location:

 Chr.16:89720368-89740925 on Build GRCh38

Assay Gene Location:

 Within Exon 14
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
ZNF276 NM_001113525.1 11 1739 NP_001106997.1
NM_152287.3 11 1729 NP_689500.2
NR_110122.1 11 1814
NR_110126.1 11 1697
NR_110128.1 11 1620
NR_110129.1 11 1709
XM_005256324.3 11 1688 XP_005256381.1
XM_005256328.3 9 1369 XP_005256385.1
XM_017023890.1 10 1664 XP_016879379.1
AK026482.1 11 1679
AK056405.1 11 1765
AK096762.1 4 2318
AK289801.1 11 1588
AK295770.1 9 1401
AK315793.1 7 1166
BC032781.1 10 1398 AAH32781.2
BC107603.1 11 1554 AAI07604.1
BC110348.1 11 1454 AAI10349.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv952079 Chr.16:89685593 - 89749492 on Build GRCh38 Deletion ZNF276 CDK10 SPATA2L FANCA VPS9D1-AS1 VPS9D1
dgv872e212 Chr.16:89731232 - 89738373 on Build GRCh38 Loss ZNF276 FANCA
nsv573743 Chr.16:89664419 - 89853617 on Build GRCh38 Gain SPATA33 ZNF276 CDK10 SPATA2L FANCA LOC107984817 LOC105371419 VPS9D1-AS1 VPS9D1 SPIRE2
nsv833330 Chr.16:89678466 - 89741783 on Build GRCh38 Loss ZNF276 CDK10 SPATA2L FANCA VPS9D1-AS1 VPS9D1
nsv482951 Chr.16:88633593 - 90228345 on Build GRCh38 Loss SPATA2L GAS8 FANCA LOC105371414 VPS9D1-AS1 IL17C CYBA MVD RNF166 SNAI3-AS1 ZNF276 TCF25 APRT VPS9D1 DPEP1 CPNE7 PIEZO1 SPATA33 PRDM7 LOC105371409 MIR4722 TUBB8P7 LOC101927817 LOC100289580 MC1R SPG7 DBNDD1 DEF8 PABPN1L LOC107987238 GAS8-AS1 CBFA2T3 SPIRE2 LOC100287036 LOC101927793 CDK10 URAHP LOC100129697 LOC105371419 FAM157C ACSF3 GALNS ZNF778 CTU2 LOC339059 SLC22A31 LOC107984817 LOC400558 CENPBD1 TRAPPC2L RPL13 CDH15 AFG3L1P LINC00304 CHMP1A ANKRD11 SNAI3 SNORD68 CDT1 TUBB3
nsv509639 Chr.16:89513538 - 89775915 on Build GRCh38 Insertion SPATA33 CDK10 SPATA2L FANCA VPS9D1-AS1 CHMP1A SPG7 ZNF276 SNORD68 RPL13 VPS9D1 DPEP1 CPNE7
nsv1931 Chr.16:89713649 - 89746701 on Build GRCh38 Insertion ZNF276 FANCA VPS9D1-AS1 VPS9D1
esv2762221 Chr.16:89610380 - 90039318 on Build GRCh38 Gain+Loss SPATA33 CDK10 SPATA2L GAS8 FANCA LOC105371419 AFG3L1P VPS9D1-AS1 MC1R CHMP1A DBNDD1 DEF8 ZNF276 TCF25 LOC107984817 CENPBD1 GAS8-AS1 VPS9D1 DPEP1 SPIRE2 TUBB3
dgv873e212 Chr.16:89734780 - 89738373 on Build GRCh38 Loss ZNF276 FANCA
nsv428331 Chr.16:89216635 - 90185980 on Build GRCh38 Gain+Loss CDK10 SPATA2L GAS8 URAHP FANCA LOC105371419 FAM157C LOC105371414 VPS9D1-AS1 ZNF778 ZNF276 TCF25 LOC107984817 CENPBD1 RPL13 VPS9D1 DPEP1 CPNE7 SPATA33 PRDM7 AFG3L1P TUBB8P7 LOC101927817 MC1R CHMP1A ANKRD11 SPG7 DBNDD1 DEF8 SNORD68 GAS8-AS1 SPIRE2 LOC100287036 TUBB3
dgv875e212 Chr.16:89737043 - 89738817 on Build GRCh38 Loss ZNF276 FANCA
nsv833331 Chr.16:89726091 - 89849806 on Build GRCh38 Gain+Loss ZNF276 FANCA LOC107984817 LOC105371419 SPIRE2
esv3572253 Chr.16:89737225 - 89738373 on Build GRCh38 Gain ZNF276 FANCA

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