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See other ZGPAT CNV Assays ›
Gene Symbol
ZGPAT
Assay Reference Genome
Location

Chr.20:63708596 on build GRCh38
Cytoband
20q13.33
Assay ID Hs00149004_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 84619

Gene Name:

 zinc finger CCCH-type and G-patch domain containing

Gene Aliases:

 GPATC6, GPATCH6, KIAA1847, ZC3H9, ZC3HDC9, ZIP

Location:

 Chr.20:63707442-63736142 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 2 - Exon 3
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
ZGPAT NM_001083113.1 NP_001076582.1
NM_001195653.1 NP_001182582.1
NM_001195654.1 NP_001182583.1
NM_032527.4 NP_115916.3
NM_181485.2 NP_852150.2
AB058750.3
AK027878.1 BAB55426.1
AK074961.1 BAC11317.1
AK307368.1
AK314726.1
BC019338.1 AAH19338.1
BC032612.1 AAH32612.1
CV027894.1
DA055150.1
DA252406.1
DA848516.1
DB025637.1
KU178806.1
KU178807.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv953308 Chr.20:63650148 - 63831847 on Build GRCh38 Deletion LIME1 ARFRP1 ZBTB46 SLC2A4RG ZBTB46-AS1 RTEL1-TNFRSF6B STMN3 TNFRSF6B RTEL1 ZGPAT
nsv1160690 Chr.20:63639552 - 63744287 on Build GRCh38 Deletion LIME1 ARFRP1 ZBTB46 SLC2A4RG RTEL1-TNFRSF6B STMN3 TNFRSF6B RTEL1 ZGPAT
nsv428381 Chr.20:63583375 - 64334167 on Build GRCh38 Gain+Loss LIME1 MIR941-3 DNAJC5 PCMTD2 ARFRP1 SLC2A4RG MIR941-2 ABHD16B ZBTB46-AS1 UCKL1-AS1 ZNF512B STMN3 MIR941-5 SAMD10 TNFRSF6B RTEL1 SOX18 TCEA2 GMEB2 PRPF6 TPD52L2 ZGPAT MIR6813 LKAAEAR1 MIR941-4 MIR941-1 LINC00266-1 RGS19 C20orf181 RTEL1-TNFRSF6B LINC00176 UCKL1 OPRL1 ZBTB46 LOC100505771 MIR647 MYT1 MIR1914 NPBWR2
nsv828801 Chr.20:63706624 - 63731055 on Build GRCh38 Loss ARFRP1 ZGPAT
nsv586611 Chr.20:63680946 - 63709340 on Build GRCh38 Loss ARFRP1 RTEL1-TNFRSF6B TNFRSF6B RTEL1 ZGPAT
nsv470563 Chr.20:63486715 - 63793308 on Build GRCh38 Loss LIME1 ARFRP1 SLC2A4RG EEF1A2 SRMS PTK6 FNDC11 RTEL1-TNFRSF6B STMN3 TNFRSF6B RTEL1 ZBTB46 GMEB2 LOC100505771 HELZ2 ZGPAT PPDPF
esv2758806 Chr.20:63470996 - 63745014 on Build GRCh38 Gain+Loss LIME1 ARFRP1 KCNQ2 SLC2A4RG EEF1A2 SRMS PTK6 FNDC11 RTEL1-TNFRSF6B STMN3 TNFRSF6B RTEL1 ZBTB46 GMEB2 LOC100505771 HELZ2 ZGPAT PPDPF

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