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See other CASKIN1 CNV Assays ›
Gene Symbol
CASKIN1
Assay Reference Genome
Location

Chr.16:2179862 on build GRCh38
Cytoband
16p13.3
Assay ID Hs00161302_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 57524

Gene Name:

 CASK interacting protein 1

Gene Aliases:

 ANKS5A

Location:

 Chr.16:2177183-2196464 on Build GRCh38

Assay Gene Location:

 Within Exon 18
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
CASKIN1 NM_020764.3 18 3538 NP_065815.1
AB037727.1 10 2675 BAA92544.1
AF451977.1 18 3604 AAL49758.1
BC042011.1 AAH42011.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication WASIR2 NTN3 FBXL16 MIR6859-4 PRR35 HBA2 LOC107984876 JMJD8 BRICD5 ABCA3 FAM173A BAIAP3 C16orf91 LOC105371045 CEMP1 SPSB3 SNHG19 LOC105371047 STUB1 PDPK1 FLJ42627 RPS2 SOX8 NUBP2 PDIA2 MIR3180-5 MIR4516 IFT140 MIR3178 METRN TPSAB1 RHOT2 ABCA17P C16orf59 HBQ1 WFIKKN1 ZNF598 RAB40C NME3 NOXO1 MIR3677 MIR4717 ATP6V0C MIR6511B1 POLR3K RGS11 RPL3L MPG TPSD1 AXIN1 AMDHD2 MIR5587 RPUSD1 TPSB2 METTL26 GNG13 LOC100287175 LOC652276 PRSS27 TSC2 LMF1 FAHD1 TRAF7 E4F1 SNORD60 LINC00254 PKD1 ECI1 RNF151 TSR3 ARHGDIG LOC106660606 LINC00235 MRPS34 PGP FAM234A NHLRC4 LOC100134368 CRAMP1 CACNA1H TPSG1 HBA1 HS3ST6 TBC1D24 MAPK8IP3 LOC105371038 SNHG9 MSLN SNORA10 PTX4 SLC9A3R2 WDR90 WDR24 MLST8 PRR25 MSRB1 LOC101929280 MCRIP2 PRSS29P GFER NDUFB10 LOC729652 HN1L KCTD5 SNRNP25 MIR6767 TBL3 RHBDL1 MIR3177 SYNGR3 RNPS1 RAB11FIP3 HBZ HAGH DNASE1L2 ERVK13-1 RPL23AP5 MEIOB MIR3176 C1QTNF8 LUC7L SSTR5 DDX11L10 HBM CASKIN1 MIR1225 NPW NTHL1 DECR2 NME4 IGFALS SSTR5-AS1 TMEM204 CLCN7 SNORA78 CCDC78 SNORA64 RAB26 HAGHL TMEM8A MRPL28 LOC105371184 MIR940 UNKL LMF1-AS1 EME2 CAPN15 LOC105371046 MIR662 CCDC154 PIGQ RHBDF1 GNPTG NARFL LOC105371049 MIR6768 TELO2 LOC107987233 NPRL3 CCNF CHTF18 UBE2I
nsv471072 Chr.16:1971892 - 2317508 on Build GRCh38 Loss MIR4717 MIR6511B1 CASKIN1 MIR1225 NPW NTHL1 BRICD5 ABCA3 SLC9A3R2 MLST8 SNHG19 RAB26 MIR940 GFER TSC2 TRAF7 E4F1 SNORD60 MIR3180-5 PKD1 MIR4516 ECI1 LOC105371049 TBL3 SYNGR3 LOC106660606 RNPS1 PGP DNASE1L2 ZNF598 NOXO1 MIR3677
dgv4861n54 Chr.16:2083900 - 2246850 on Build GRCh38 Loss MIR6511B1 CASKIN1 MIR1225 TRAF7 E4F1 SNORD60 MIR3180-5 BRICD5 PKD1 MIR4516 ECI1 LOC105371049 MLST8 SNHG19 PGP RAB26 DNASE1L2 TSC2
dgv4863n54 Chr.16:2141733 - 2274302 on Build GRCh38 Loss CASKIN1 TRAF7 E4F1 SNORD60 BRICD5 ECI1 MLST8 LOC106660606 RNPS1 SNHG19 PGP RAB26 DNASE1L2 MIR940 MIR3677
nsv457349 Chr.16:2055054 - 2200730 on Build GRCh38 Loss MIR6511B1 CASKIN1 MIR1225 TRAF7 SNHG19 SNORD60 RAB26 MIR3180-5 PKD1 MIR4516 LOC105371049 TSC2
dgv456n67 Chr.16:2175295 - 2181915 on Build GRCh38 Gain CASKIN1 TRAF7
nsv457351 Chr.16:2156590 - 2274302 on Build GRCh38 Loss MLST8 CASKIN1 LOC106660606 TRAF7 RNPS1 E4F1 PGP BRICD5 DNASE1L2 ECI1 MIR940 MIR3677
nsv1052260 Chr.16:2074546 - 2629655 on Build GRCh38 Gain MIR4717 NTN3 ATP6V0C MIR6511B1 CASKIN1 MIR1225 TBC1D24 BRICD5 ABCA3 AMDHD2 MLST8 CEMP1 SNHG19 RAB26 MIR940 LOC652276 TSC2 PDPK1 TRAF7 E4F1 SNORD60 MIR3180-5 LOC729652 PKD1 MIR4516 ECI1 MIR3178 LOC105371049 MIR6767 MIR6768 ABCA17P C16orf59 LOC106660606 RNPS1 CCNF PGP DNASE1L2 MIR3677
nsv952902 Chr.16:2143400 - 2339999 on Build GRCh38 Deletion MIR4717 CASKIN1 TRAF7 E4F1 SNORD60 BRICD5 ABCA3 ECI1 MLST8 LOC106660606 RNPS1 SNHG19 PGP RAB26 DNASE1L2 MIR940 MIR3677

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More Information


Set Membership:

 Intragenic Exonic DGV Variation

Panther Classification:

Molecular Function -

scaffold/adaptor protein

Gene Ontology Categories:

Function(s) Process(es)


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