Genomic Map
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Target Gene Details
Entrez Gene ID: | 6472 |
Gene Name: | serine hydroxymethyltransferase 2 |
Gene Aliases: |
GLYA, HEL-S-51e, SHMT |
Location: |
Chr.12:57229573-57234935 on Build GRCh38 |
Assay Gene Location: | Within Exon 1 |
| Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
|---|---|---|---|---|
| SHMT2 | NM_001166356.1 | 1 | 203 | NP_001159828.1 |
| NM_005412.5 | 1 | 203 | NP_005403.2 | |
| NR_029417.1 | 1 | 203 | ||
| XM_011538675.2 | 1 | 115 | XP_011536977.1 | |
| XM_011538677.2 | 1 | 96 | XP_011536979.1 | |
| AK055053.1 | ||||
| AK223555.1 | BAD97275.1 | |||
| AK295941.1 | ||||
| AK298231.1 | ||||
| AK301339.1 | ||||
| AK303827.1 | ||||
| BC011911.2 | AAH11911.1 | |||
| BC013677.2 | AAH13677.1 | |||
| BC032584.1 | AAH32584.1 | |||
| BC044211.1 | AAH44211.1 | |||
| BC091501.1 | AAH91501.1 | |||
| BT006866.1 | AAP35512.1 | |||
| DC386590.1 | 1 | 203 | ||
| EU668344.1 | ||||
| KU178333.1 | ||||
| KU178334.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
| Target Variation |
Location | CNV Subtype |
Genes |
|---|---|---|---|
| nsv482992 | Chr.12:56206217 - 57706217 on Build GRCh38 | Gain+Loss |
 BAZ2A
PAN2
SNORA105C
GLS2
MIR6758
MBD6
DCTN2
MIP
NAB2
NACA
HBCBP
GLI1
KIF5A
APOF
HSD17B6
SDR9C7
RNF41
SNORD59B
CNPY2
RDH16
ARHGAP9
OS9
TIMELESS
GPR182
IL23A
DDIT3
NEMP1
LRP1-AS
MIR1228
ARHGEF25
SLC26A10
SNORD59A
RBMS2
NXPH4
SPRYD4
R3HDM2
COQ10A
STAC3
MARS
LOC101927583
ZBTB39
SHMT2
ANKRD52
PIP4K2C
SLC39A5
NABP2
NDUFA4L2
MYO1A
DTX3
TAC3
STAT6
STAT2
MIR616
B4GALNT1
CS
ATP5B
PRIM1
INHBE
PTGES3
LRP1
INHBC
|
| nsv519293 | Chr.12:57189889 - 57243810 on Build GRCh38 | Loss |
NDUFA4L2
NXPH4
SHMT2
MIR1228
STAC3
LRP1
|
| nsv952189 | Chr.12:57127118 - 57245617 on Build GRCh38 | Deletion |
NDUFA4L2
NXPH4
SHMT2
LRP1-AS
MIR1228
STAC3
LRP1
|
| dgv96n21 | Chr.12:57139199 - 57243810 on Build GRCh38 | Loss |
NDUFA4L2
NXPH4
SHMT2
LRP1-AS
MIR1228
STAC3
LRP1
|
Back To TopMore Information
Set Membership: |
Intragenic
Exonic
DGV Variation
|
Panther Classification:
Gene Ontology Categories:
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