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Gene Symbol
CLEC4M
Assay Reference Genome
Location

Chr.19:7769023 on build GRCh38
Cytoband
19p13.2
Assay ID Hs00233392_cn
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Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 10332

Gene Name:

 C-type lectin domain family 4 member M

Gene Aliases:

 CD209L, CD299, DC-SIGN2, DC-SIGNR, DCSIGNR, HP10347, L-SIGN, LSIGN

Location:

 Chr.19:7763052-7770559 on Build GRCh38

Assay Gene Location:

 Within Exon 6
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
CLEC4M NM_001144904.1 7 1200 NP_001138376.1
NM_001144905.1 8 1281 NP_001138377.1
NM_001144906.1 6 945 NP_001138378.1
NM_001144907.1 7 1152 NP_001138379.1
NM_001144908.1 6 964 NP_001138380.1
NM_001144909.1 8 1215 NP_001138381.1
NM_001144910.1 8 1284 NP_001138382.1
NM_001144911.1 5 1156 NP_001138383.1
NM_014257.4 7 1353 NP_055072.3
NR_026707.1 6 1801
NR_026708.1 5 1688
NR_026709.1 4 1625
XM_006722611.2 7 1285 XP_006722674.1
XM_006722612.3 6 1359 XP_006722675.1
XM_006722613.3 6 1361 XP_006722676.1
XM_006722614.3 5 1277 XP_006722677.1
XM_006722615.2 6 1240 XP_006722678.1
AA431250.1 1 84
AB015629.1 5 1062 BAA76496.1
AF245219.2 AAG13848.2
AF290887.1 8 1219 AAK20998.1
AK292278.1 8 1280
AK304499.1 7 1133
AK314704.1
AY042234.1 AAK91859.1
AY042235.1 AAK91860.1
AY042236.1 AAK91861.1
AY042237.1 AAK91862.1
AY042238.1 AAK91863.1
AY042239.1 AAK91864.1
AY042240.1 AAK91865.1
AY343913.1 AAR04559.1
BC038851.1 7 1307 AAH38851.1
BC110614.2 5 1208 AAI10615.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv1058579 Chr.19:7768804 - 7820978 on Build GRCh38 Gain CLEC4M CLEC4GP1
nsv1060887 Chr.19:7089546 - 7861087 on Build GRCh38 Gain PEX11G C19orf45 INSR ZNF358 PNPLA6 PET100 PCP2 FCER2 MIR6792 LOC107985283 EVI5L RETN MCEMP1 STXBP2 XAB2 MCOLN1 LOC100128573 TRAPPC5 CLEC4M CLEC4GP1 CD209 CLEC4G CAMSAP3 ARHGEF18
nsv833732 Chr.19:7672656 - 7871329 on Build GRCh38 Gain EVI5L MCEMP1 TRAPPC5 CLEC4M FCER2 CLEC4GP1 CD209 CLEC4G PRR36
esv2751809 Chr.19:6896369 - 7816144 on Build GRCh38 Gain LOC729458 C19orf45 ZNF358 MBD3L2 FCER2 MIR6792 FLJ25758 RETN STXBP2 XAB2 MCOLN1 MBD3L3 ADGRE4P MBD3L5 PEX11G INSR PNPLA6 PET100 MBD3L4 PCP2 LOC107985283 MCEMP1 LOC100128573 TRAPPC5 CLEC4M CLEC4GP1 CD209 ZNF557 CLEC4G ADGRE1 CAMSAP3 ARHGEF18
nsv1061452 Chr.19:7657750 - 7785131 on Build GRCh38 Gain RETN MCEMP1 TRAPPC5 CLEC4M FCER2 CD209 CLEC4G

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More Information


Additional Information:

For this assay, SNP(s) [rs113121475] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Exonic DGV Variation

Panther Classification:

Molecular Function -

membrane traffic protein

Gene Ontology Categories:

Function(s) Process(es)


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