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See other TRIM39 CNV Assays ›
Gene Symbol
TRIM39
Assay Reference Genome
Location

Chr.6:30330885 on build GRCh38
Cytoband
6p22.1
Assay ID Hs00272464_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 56658

Gene Name:

 tripartite motif containing 39

Gene Aliases:

 RNF23, TFP, TRIM39B

Location:

 Chr.6:30326844-30343729 on Build GRCh38

Assay Gene Location:

 Overlaps Exon 5 - Intron 5
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
TRIM39 NM_021253.3 NP_067076.2
NM_172016.2 NP_742013.1
AB046381.1 BAB16374.1
AK292512.1
AX776007.1 CAE11703.1
BC007661.2 AAH07661.1
BC034985.1 AAH34985.1
BT007370.1 AAP36034.1

Target Gene Details

Entrez Gene ID:

 202658

Gene Name:

 TRIM39-RPP21 readthrough

Gene Aliases:

 TRIM39R

Location:

 Chr.6:30329311-30346858 on Build GRCh38

Assay Gene Location:

 Overlaps Exon 2 - Intron 2
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
TRIM39-RPP21 NM_001199119.1 NP_001186048.1
AI805914.1
EU012025.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv1074389 Chr.6:29116522 - 31446623 on Build GRCh38 Deletion ABCF1 TUBB MDC1-AS1 PSORS1C2 C6orf136 MOG HCG27 CCHCR1 PSORS1C1 HLA-L HLA-F-AS1 MIR877 GABBR1 TRIM10 TRIM39 ZNRD1 OR14J1 MUC21 HLA-B TRIM31-AS1 LOC554223 TRIM15 POU5F1 PRR3 HLA-H SNORD32B HLA-E PPP1R18 HCG4B LOC101929006 PSORS1C3 GTF2H4 C6orf15 MDC1 OR5V1 ZFP57 HLA-C RNF39 PPP1R10 LINC01015 IFITM4P NRM HLA-K ZNRD1ASP GNL1 VARS2 TCF19 UBD RPP21 MICA HCG4 HCG17 TRIM31 OR2H1 LOC105375014 ATAT1 MAS1L DHX16 HCG9 HCG20 LINC00243 HLA-A DDR1 TRIM26 MIR4640 HLA-G CDSN OR10C1 HLA-F HLA-J MUC22 HCG8 DPCR1 OR11A1 PPP1R11 TRIM39-RPP21 TRIM40 OR12D3 MRPS18B IER3 OR2J2 HCG22 OR2H2 MIR6891 HCG18 SFTA2 FLOT1 OR12D2
nsv1122126 Chr.6:28628023 - 31244023 on Build GRCh38 Deletion ABCF1 TUBB MDC1-AS1 PSORS1C2 C6orf136 MOG LINC01623 HCG27 CCHCR1 PSORS1C1 HLA-L HLA-F-AS1 MIR877 GABBR1 TRIM10 TRIM39 ZNRD1 OR14J1 MUC21 TRIM31-AS1 LOC554223 TRIM15 POU5F1 PRR3 OR2J3 HLA-H SNORD32B HLA-E PPP1R18 HCG16 HCG4B LINC01556 LOC101929006 PSORS1C3 GTF2H4 C6orf15 MDC1 OR5V1 ZFP57 LINC00533 HCG14 RNF39 PPP1R10 LINC01015 IFITM4P NRM HLA-K ZNRD1ASP GNL1 VARS2 TCF19 UBD LOC100129636 RPP21 HCG4 HCG17 TRIM31 OR2H1 LOC105375014 ATAT1 OR2W1 MAS1L DHX16 HCG9 HCG20 LINC00243 HLA-A DDR1 TRIM26 MIR4640 HLA-G CDSN OR2B3 OR10C1 HLA-F TRIM27 HLA-J MUC22 HCG8 DPCR1 OR11A1 PPP1R11 TRIM39-RPP21 TRIM40 OR12D3 ZNF311 MRPS18B IER3 OR2J2 HCG22 OR2H2 HCG18 SFTA2 FLOT1 OR12D2
nsv1144137 Chr.6:29720323 - 31338123 on Build GRCh38 Deletion ABCF1 TUBB MDC1-AS1 PSORS1C2 C6orf136 HCG27 CCHCR1 PSORS1C1 HLA-L HLA-F-AS1 MIR877 TRIM10 TRIM39 ZNRD1 MUC21 TRIM31-AS1 LOC554223 TRIM15 POU5F1 PRR3 HLA-H HLA-E PPP1R18 HCG4B PSORS1C3 GTF2H4 C6orf15 MDC1 HLA-C RNF39 PPP1R10 IFITM4P NRM HLA-K ZNRD1ASP GNL1 VARS2 TCF19 RPP21 HCG4 HCG17 TRIM31 LOC105375014 ATAT1 DHX16 HCG9 HCG20 LINC00243 HLA-A DDR1 TRIM26 MIR4640 HLA-G CDSN HLA-F HLA-J MUC22 HCG8 DPCR1 PPP1R11 TRIM39-RPP21 TRIM40 MRPS18B IER3 HCG22 HCG18 SFTA2 FLOT1
nsv601264 Chr.6:29883666 - 31320716 on Build GRCh38 Loss ABCF1 TUBB MDC1-AS1 PSORS1C2 C6orf136 HCG27 CCHCR1 PSORS1C1 HLA-L MIR877 TRIM10 TRIM39 ZNRD1 MUC21 TRIM31-AS1 TRIM15 POU5F1 PRR3 HLA-H HLA-E PPP1R18 HCG4B PSORS1C3 GTF2H4 C6orf15 MDC1 HLA-C RNF39 PPP1R10 NRM HLA-K ZNRD1ASP GNL1 VARS2 TCF19 RPP21 HCG17 TRIM31 LOC105375014 ATAT1 DHX16 HCG9 HCG20 LINC00243 HLA-A DDR1 TRIM26 MIR4640 CDSN HLA-J MUC22 HCG8 DPCR1 PPP1R11 TRIM39-RPP21 TRIM40 MRPS18B IER3 HCG22 HCG18 SFTA2 FLOT1
esv3411275 Chr.6:29981607 - 31490616 on Build GRCh38 Duplication ABCF1 TUBB MDC1-AS1 PSORS1C2 C6orf136 HCG27 CCHCR1 PSORS1C1 HLA-L MIR877 TRIM10 TRIM39 ZNRD1 MUC21 HLA-B TRIM31-AS1 HCG26 TRIM15 POU5F1 PRR3 HLA-E PPP1R18 PSORS1C3 GTF2H4 C6orf15 MDC1 HLA-C RNF39 PPP1R10 NRM ZNRD1ASP GNL1 VARS2 TCF19 RPP21 MICA HCG17 TRIM31 LOC105375014 ATAT1 DHX16 HCG20 LINC00243 DDR1 TRIM26 MIR4640 CDSN HLA-J MUC22 HCG8 DPCR1 PPP1R11 TRIM39-RPP21 TRIM40 MRPS18B IER3 LOC102725068 HCG22 MIR6891 HCG18 SFTA2 FLOT1 HCP5

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