Hs00276299_cn

• Gene Symbol: CTDP1
• Assay Reference Genome Location: Chr.18:79695992 on build GRCh38
• Cytoband: 18q23

Target Gene Details

• Entrez Gene ID: 9150
• Gene Name: CTD phosphatase subunit 1
• Gene Aliases: CCFDN, FCP1
• Location: Chr.18:79679801-79754510 on Build GRCh38
• Assay Gene Location: Overlaps Intron 3 - Exon 4

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
CTDP1	NM_001202504.1			NP_001189433.1
	NM_001318511.1			NP_001305440.1
	NM_004715.4			NP_004706.3
	NM_048368.3			NP_430255.2
	XM_011526261.1			XP_011524563.1
	AF081287.1			AAC64549.1
	AF154115.1			AAD42088.1
	BC052576.1			AAH52576.1
	BC063447.1			AAH63447.1
	DB451780.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv509709	Chr.18:79685368 - 79838375 on Build GRCh38	Insertion	LOC105376875 CTDP1 KCNG2
nsv428359	Chr.18:79277548 - 80255221 on Build GRCh38	Gain	CTDP1 LOC284241 PARD6G-AS1 PQLC1 KCNG2 ADNP2 RBFADN ATP9B RBFA LOC284240 PARD6G LOC105376875 HSBP1L1 NFATC1 TXNL4A LOC107985149
nsv525694	Chr.18:79395184 - 79961125 on Build GRCh38	Loss	LOC105376875 CTDP1 LOC284241 PQLC1 KCNG2 NFATC1 LOC284240
nsv470437	Chr.18:79657934 - 80103778 on Build GRCh38	Loss	LOC105376875 HSBP1L1 CTDP1 LOC284241 PQLC1 KCNG2 RBFADN RBFA TXNL4A
nsv519406	Chr.18:79630343 - 79897319 on Build GRCh38	Gain	LOC105376875 CTDP1 LOC284241 KCNG2
nsv1065902	Chr.18:78538045 - 80257174 on Build GRCh38	Gain	CTDP1 LOC284241 PARD6G-AS1 PQLC1 KCNG2 ADNP2 SALL3 RBFADN ATP9B RBFA LOC284240 PARD6G LOC105376875 HSBP1L1 NFATC1 LOC100996274 TXNL4A LOC107985149
nsv1064506	Chr.18:79580427 - 79773771 on Build GRCh38	Gain	LOC105376875 CTDP1 LOC284241 LOC284240
nsv1066888	Chr.18:79643023 - 79769924 on Build GRCh38	Gain	LOC105376875 CTDP1 LOC284241

More Information

• Set Membership: Intragenic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

protein phosphatase

Gene Ontology Categories:

Process(es)

transcription from RNA polymerase II promoter
transcription elongation from RNA polymerase II promoter
protein dephosphorylation
exit from mitosis
positive regulation of viral transcription
cell division
negative regulation of cell growth involved in cardiac muscle cell development
dephosphorylation of RNA polymerase II C-terminal domain

Function(s)

phosphoprotein phosphatase activity
protein binding
CTD phosphatase activity