Hs00352867_cn

• Gene Symbol: SPATC1
• Assay Reference Genome Location: Chr.8:144046665 on build GRCh38
• Cytoband: 8q24.3

Target Gene Details

• Entrez Gene ID: 375686
• Gene Name: spermatogenesis and centriole associated 1
• Gene Aliases: SPATA15
• Location: Chr.8:144010992-144047114 on Build GRCh38
• Assay Gene Location: Within Exon 10

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
SPATC1	NM_001134374.1	4	1447	NP_001127846.1
	NM_198572.2	5	1587	NP_940974.2
	XM_011517021.1	6	1692	XP_011515323.1
	XM_011517022.2	6	1978	XP_011515324.1
	XM_011517023.2	6	2996	XP_011515325.1
	XM_011517024.2	7	2217	XP_011515326.1
	XM_011517025.2	6	2652	XP_011515327.1
	XM_017013399.1	7	1511	XP_016868888.1
	AB092352.1	5	1575	BAD08232.1
	AK301710.1	4	1435
	BC050390.1	5	1577	AAH50390.1
	BC053547.1	5	1562	AAH53547.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv824801	Chr.8:144046683 - 144059698 on Build GRCh38	Gain	OPLAH MIR6846 SMPD5 SPATC1
nsv470249	Chr.8:143889098 - 144519234 on Build GRCh38	Loss	OPLAH MIR6848 GPT PLEC MROH1 MIR7112 LOC101928902 MIR661 MIR6847 VPS28 SCRT1 MIR6849 RECQL4 FBXL6 FOXH1 HGH1 SLC39A4 MIR939 LRRC14 SMPD5 GRINA CPSF1 DGAT1 MFSD3 GPAA1 MAF1 MIR6846 SLC52A2 SCX HSF1 EXOSC4 TONSL-AS1 WDR97 SHARPIN CYHR1 TMEM249 PPP1R16A BOP1 MIR1234 LOC101928953 MIR6893 TONSL PARP10 ADCK5 SPATC1 KIFC2 CYC1
nsv6446	Chr.8:144012529 - 144050050 on Build GRCh38	Insertion	SMPD5 SPATC1
nsv612914	Chr.8:143972494 - 144120626 on Build GRCh38	Loss	OPLAH GPAA1 PLEC MAF1 MIR6846 EXOSC4 MIR6847 WDR97 SHARPIN PARP10 SMPD5 SPATC1 GRINA CYC1
nsv950015	Chr.8:143866633 - 144125597 on Build GRCh38	Deletion	OPLAH GPAA1 PLEC MAF1 MIR6846 EXOSC4 MIR661 MIR6847 WDR97 SHARPIN EPPK1 PARP10 SMPD5 SPATC1 GRINA CYC1
nsv1161815	Chr.8:143775169 - 144080674 on Build GRCh38	Deletion	OPLAH LOC642574 SCRIB PLEC MIR6846 MIR937 EXOSC4 MIR661 MIR6847 PUF60 EPPK1 MIR6845 NRBP2 PARP10 SMPD5 SPATC1 GRINA
nsv612916	Chr.8:144044224 - 144056712 on Build GRCh38	Loss	OPLAH SMPD5 SPATC1
nsv612915	Chr.8:144007080 - 144224185 on Build GRCh38	Loss	OPLAH GPAA1 MROH1 MAF1 MIR6846 EXOSC4 MIR6847 WDR97 SHARPIN HGH1 SMPD5 SPATC1 CYC1
nsv612917	Chr.8:144045204 - 144063598 on Build GRCh38	Loss	OPLAH MIR6846 SMPD5 SPATC1
nsv515809	Chr.8:143904439 - 144519234 on Build GRCh38	Gain+Loss	OPLAH MIR6848 GPT PLEC MROH1 MIR7112 LOC101928902 MIR661 MIR6847 VPS28 SCRT1 MIR6849 RECQL4 FBXL6 FOXH1 HGH1 SLC39A4 MIR939 LRRC14 SMPD5 GRINA CPSF1 DGAT1 MFSD3 GPAA1 MAF1 MIR6846 SLC52A2 SCX HSF1 EXOSC4 TONSL-AS1 WDR97 SHARPIN CYHR1 TMEM249 PPP1R16A BOP1 MIR1234 LOC101928953 MIR6893 TONSL PARP10 ADCK5 SPATC1 KIFC2 CYC1
dgv12431n54	Chr.8:143845100 - 144161320 on Build GRCh38	Loss	OPLAH GPAA1 PLEC MROH1 MAF1 MIR6846 EXOSC4 MIR661 MIR6847 WDR97 SHARPIN EPPK1 HGH1 PARP10 SMPD5 SPATC1 GRINA CYC1
nsv428208	Chr.8:144041826 - 144722291 on Build GRCh38	Gain	OPLAH MIR6848 GPT MROH1 MIR7112 ZNF251 LOC101928902 MIR6847 VPS28 SCRT1 MIR6849 RECQL4 FBXL6 FOXH1 HGH1 LRRC24 SLC39A4 MIR939 LRRC14 SMPD5 CPSF1 DGAT1 MFSD3 GPAA1 MAF1 MIR6846 SLC52A2 SCX HSF1 EXOSC4 TONSL-AS1 WDR97 SHARPIN CYHR1 TMEM249 PPP1R16A BOP1 MIR1234 LOC101928953 C8orf82 MIR6893 TONSL ADCK5 SPATC1 ARHGAP39 KIFC2 CYC1
nsv470250	Chr.8:143917934 - 144097007 on Build GRCh38	Gain	OPLAH GPAA1 PLEC MIR6846 PARP10 EXOSC4 MIR661 MIR6847 SMPD5 SPATC1 GRINA CYC1
dgv12433n54	Chr.8:143902404 - 144120626 on Build GRCh38	Gain	OPLAH GPAA1 PLEC MAF1 MIR6846 EXOSC4 MIR661 MIR6847 WDR97 SHARPIN PARP10 SMPD5 SPATC1 GRINA CYC1
nsv612906	Chr.8:143917935 - 144090784 on Build GRCh38	Loss	OPLAH GPAA1 PLEC MIR6846 PARP10 EXOSC4 MIR661 MIR6847 SMPD5 SPATC1 GRINA

More Information

• Set Membership: Intragenic, Exonic, DGV Variation