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See other ZGPAT CNV Assays ›
Gene Symbol
ZGPAT
Assay Reference Genome
Location

Chr.20:63733709 on build GRCh38
Cytoband
20q13.33
Assay ID Hs00364997_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 84619

Gene Name:

 zinc finger CCCH-type and G-patch domain containing

Gene Aliases:

 GPATC6, GPATCH6, KIAA1847, ZC3H9, ZC3HDC9, ZIP

Location:

 Chr.20:63707442-63736142 on Build GRCh38

Assay Gene Location:

 Within Exon 5
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
ZGPAT NM_001083113.1 4 987 NP_001076582.1
NM_001195653.1 4 1011 NP_001182582.1
NM_001195654.1 NP_001182583.1
NM_032527.4 4 1030 NP_115916.3
NM_181485.2 4 960 NP_852150.2
AB058750.3 4 964
AK027878.1 4 968 BAB55426.1
AK074961.1 4 949 BAC11317.1
AK307368.1
AK314726.1 4 1000
BC019338.1 AAH19338.1
BC032612.1 4 950 AAH32612.1
KU178806.1 3 841
KU178807.1 3 841

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2722959 Chr.20:63715664 - 63806918 on Build GRCh38 Deletion ZBTB46 SLC2A4RG ZGPAT LIME1
nsv1139762 Chr.20:63731048 - 63737647 on Build GRCh38 Duplication ZGPAT LIME1
nsv586614 Chr.20:63725275 - 63741460 on Build GRCh38 Gain SLC2A4RG ZGPAT LIME1
nsv953308 Chr.20:63650148 - 63831847 on Build GRCh38 Deletion ZBTB46 SLC2A4RG ZGPAT ARFRP1 RTEL1-TNFRSF6B STMN3 TNFRSF6B ZBTB46-AS1 RTEL1 LIME1
nsv1160690 Chr.20:63639552 - 63744287 on Build GRCh38 Deletion ZBTB46 SLC2A4RG ZGPAT ARFRP1 RTEL1-TNFRSF6B STMN3 TNFRSF6B RTEL1 LIME1
esv7227 Chr.20:63715550 - 63807161 on Build GRCh38 Loss ZBTB46 SLC2A4RG ZGPAT LIME1
nsv428381 Chr.20:63583375 - 64334167 on Build GRCh38 Gain+Loss SLC2A4RG ZNF512B UCKL1 STMN3 MIR941-1 TNFRSF6B LINC00266-1 RGS19 UCKL1-AS1 MYT1 RTEL1-TNFRSF6B LOC100505771 ABHD16B MIR941-2 SOX18 MIR941-5 MIR647 DNAJC5 MIR941-4 ZGPAT ARFRP1 MIR1914 RTEL1 C20orf181 MIR941-3 ZBTB46 NPBWR2 GMEB2 TPD52L2 SAMD10 PRPF6 ZBTB46-AS1 LKAAEAR1 TCEA2 OPRL1 MIR6813 LINC00176 PCMTD2 LIME1
nsv1059142 Chr.20:63731978 - 63798885 on Build GRCh38 Gain ZBTB46 SLC2A4RG ZGPAT LIME1
nsv470563 Chr.20:63486715 - 63793308 on Build GRCh38 Loss SLC2A4RG ZGPAT ARFRP1 STMN3 TNFRSF6B RTEL1 ZBTB46 EEF1A2 GMEB2 RTEL1-TNFRSF6B FNDC11 SRMS LOC100505771 HELZ2 PTK6 PPDPF LIME1
esv2758806 Chr.20:63470996 - 63745014 on Build GRCh38 Gain+Loss SLC2A4RG ZGPAT ARFRP1 KCNQ2 STMN3 TNFRSF6B RTEL1 ZBTB46 EEF1A2 GMEB2 RTEL1-TNFRSF6B FNDC11 SRMS LOC100505771 HELZ2 PTK6 PPDPF LIME1

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