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See other PDCD1 CNV Assays ›
Gene Symbol
PDCD1
Assay Reference Genome
Location

Chr.2:241852278 on build GRCh38
Cytoband
2q37.3
Assay ID Hs00371630_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 5133

Gene Name:

 programmed cell death 1

Gene Aliases:

 CD279, PD-1, PD1, SLEB2, hPD-1, hPD-l, hSLE1

Location:

 Chr.2:241849881-241858908 on Build GRCh38

Assay Gene Location:

 Within Exon 3
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
PDCD1 NM_005018.2 3 580 NP_005009.2
XM_006712573.2 3 582 XP_006712636.1
XM_017004293.1 3 582 XP_016859782.1
AK313848.1 3 582
AY206416.1 AAO25116.1
AY238517.1 3 512 AAO63583.1
BC074740.2 3 558 AAH74740.1
KJ865859.1 3 512
KJ865860.1 3 512
KJ865861.1 3 512
U64863.1 3 580 AAC51773.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv955302 Chr.2:241840449 - 241891349 on Build GRCh38 Deletion LINC01237 RTP5 PDCD1
nsv998059 Chr.2:241830506 - 242001132 on Build GRCh38 Loss LOC285097 LOC102723927 LOC285095 LINC01237 RTP5 PDCD1
esv3893582 Chr.2:241821357 - 241977794 on Build GRCh38 Gain LOC102723927 LOC285095 LINC01237 RTP5 LOC107986004 PDCD1
nsv997984 Chr.2:241723206 - 242001132 on Build GRCh38 Gain LOC285097 LOC102723927 GAL3ST2 NEU4 LOC285095 LINC01237 D2HGDH ING5 RTP5 LOC107986004 PDCD1
dgv165e55 Chr.2:241576690 - 242072479 on Build GRCh38 Loss GAL3ST2 NEU4 LOC285095 ATG4B D2HGDH ING5 DTYMK PDCD1 LOC285097 THAP4 LOC102723927 LINC01237 RTP5 LOC107986004
nsv584991 Chr.2:241805306 - 242006956 on Build GRCh38 Loss LOC285097 LOC102723927 NEU4 LOC285095 LINC01237 RTP5 LOC107986004 PDCD1
dgv4201n100 Chr.2:241793613 - 242017881 on Build GRCh38 Gain LOC285097 LOC102723927 GAL3ST2 NEU4 LOC285095 LINC01237 RTP5 LOC107986004 PDCD1
nsv1002941 Chr.2:241703438 - 242147293 on Build GRCh38 Gain LOC285097 LOC102723927 GAL3ST2 NEU4 LOC728323 LOC285095 LINC01237 D2HGDH ING5 RTP5 LOC107986004 PDCD1
nsv470533 Chr.2:241816852 - 242101996 on Build GRCh38 Loss LOC285097 LOC102723927 NEU4 LOC728323 LOC285095 LINC01237 RTP5 LOC107986004 PDCD1
dgv4200n100 Chr.2:241786337 - 242092523 on Build GRCh38 Loss LOC285097 LOC102723927 GAL3ST2 NEU4 LOC728323 LOC285095 LINC01237 RTP5 LOC107986004 PDCD1

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