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See other SMYD1 CNV Assays ›
Gene Symbol
SMYD1
Assay Reference Genome
Location

Chr.2:88093557 on build GRCh38
Cytoband
2p11.2
Assay ID Hs00449476_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 150572

Gene Name:

 SET and MYND domain containing 1

Gene Aliases:

 BOP, KMT3D, ZMYND18, ZMYND22

Location:

 Chr.2:88067780-88113384 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 4 - Intron 5
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SMYD1 NM_198274.3 NP_938015.1
XM_005264156.2 XP_005264213.1
AK091724.1 BAC03732.1
AL832035.1 CAI46139.1
AY518933.1 AAT44535.1
AY518934.1 AAT44536.1
BC126191.1
BX647878.1 CAI46077.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
dgv61n16 Chr.2:87343737 - 90254660 on Build GRCh38 Deletion IGKV2-29 IGKV1-5 LOC101927050 KRCC1 THNSL2 RGPD2 EIF2AK3 LOC730268 LOC101928403 MIR4436A RPIA FOXI3 ANKRD36BP2 IGK IGKV2-26 LOC101928371 IGKV3D-15 MIR4780 SMYD1 TEX37 IGKV1D-13 IGKC FABP1 IGKV2-24 IGKV1D-8 LINC00152 IGKV3-20 PLGLB2 MIR4435-1 LOC107985911
dgv6947n54 Chr.2:87815738 - 88850700 on Build GRCh38 Gain TEX37 KRCC1 FABP1 THNSL2 RGPD2 EIF2AK3 LOC101928403 MIR4436A RPIA FOXI3 ANKRD36BP2 LOC101928371 MIR4780 SMYD1
nsv1072005 Chr.2:87360367 - 90256528 on Build GRCh38 Deletion IGKV2-29 IGKV1-5 LOC101927050 KRCC1 THNSL2 RGPD2 EIF2AK3 LOC730268 LOC101928403 MIR4436A RPIA FOXI3 ANKRD36BP2 IGK IGKV2-26 LOC101928371 IGKV3D-15 MIR4780 SMYD1 TEX37 IGKV1D-13 IGKC FABP1 IGKV2-24 IGKV1D-8 LINC00152 IGKV3-20 PLGLB2 MIR4435-1 LOC107985911
nsv834289 Chr.2:88083076 - 88251327 on Build GRCh38 Gain FABP1 THNSL2 SMYD1
nsv1130752 Chr.2:87360364 - 90256525 on Build GRCh38 Deletion IGKV2-29 IGKV1-5 LOC101927050 KRCC1 THNSL2 RGPD2 EIF2AK3 LOC730268 LOC101928403 MIR4436A RPIA FOXI3 ANKRD36BP2 IGK IGKV2-26 LOC101928371 IGKV3D-15 MIR4780 SMYD1 TEX37 IGKV1D-13 IGKC FABP1 IGKV2-24 IGKV1D-8 LINC00152 IGKV3-20 PLGLB2 MIR4435-1 LOC107985911
nsv582384 Chr.2:87987149 - 88773214 on Build GRCh38 Loss TEX37 KRCC1 FABP1 THNSL2 RGPD2 EIF2AK3 LOC101928403 RPIA FOXI3 ANKRD36BP2 LOC101928371 MIR4780 SMYD1
nsv582386 Chr.2:88035188 - 89208087 on Build GRCh38 Loss IGKV1-5 TEX37 IGKC KRCC1 FABP1 THNSL2 EIF2AK3 IGKV2-24 LOC101928403 MIR4436A RPIA FOXI3 ANKRD36BP2 IGK IGKV2-26 LOC101928371 IGKV3-20 MIR4780 SMYD1
nsv582383 Chr.2:87915816 - 88527080 on Build GRCh38 Gain TEX37 FOXI3 KRCC1 FABP1 THNSL2 RGPD2 MIR4780 SMYD1

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