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See other CASKIN1 CNV Assays ›
Gene Symbol
CASKIN1
Assay Reference Genome
Location

Chr.16:2186750 on build GRCh38
Cytoband
16p13.3
Assay ID Hs00464255_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 57524

Gene Name:

 CASK interacting protein 1

Gene Aliases:

 ANKS5A

Location:

 Chr.16:2177183-2196464 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 10 - Exon 10
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
CASKIN1 NM_020764.3 NP_065815.1
AB037727.1 BAA92544.1
AF451977.1 AAL49758.1
BC042011.1 AAH42011.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication MSRB1 HAGH SYNGR3 C16orf91 MIR1225 NHLRC4 NTN3 AXIN1 CAPN15 LOC101929280 MRPL28 RPL3L HBA2 SSTR5-AS1 MRPS34 MEIOB RNF151 SNORA10 FLJ42627 PRR35 MIR3176 NARFL NTHL1 CCNF BRICD5 PGP CCDC154 EME2 WDR24 JMJD8 LOC100287175 WDR90 RAB11FIP3 GFER MSLN CEMP1 CCDC78 FBXL16 MIR5587 MIR6511B1 PDIA2 NUBP2 ATP6V0C TSR3 MIR6859-4 RNPS1 TPSAB1 CACNA1H LOC107984876 SNORA78 MPG SNORA64 FAM173A PDPK1 CHTF18 NPW PIGQ SLC9A3R2 WFIKKN1 HN1L SNHG19 CLCN7 LOC107987233 HBM LOC105371045 NOXO1 SNORD60 MIR3177 ABCA3 GNPTG PRR25 ARHGDIG RAB26 MAPK8IP3 TRAF7 MIR940 MIR3677 LOC652276 TPSG1 LOC105371049 TMEM8A LINC00254 LOC105371184 LOC106660606 NME4 LOC105371038 SPSB3 TMEM204 POLR3K LOC105371046 MIR6767 KCTD5 MIR3178 LOC105371047 STUB1 SNHG9 MIR3180-5 C1QTNF8 NME3 NDUFB10 IGFALS LMF1-AS1 PKD1 DDX11L10 SOX8 CASKIN1 MCRIP2 DECR2 HS3ST6 TPSD1 RHBDF1 BAIAP3 IFT140 MIR662 WASIR2 GNG13 TSC2 MIR6768 ERVK13-1 PRSS29P SNRNP25 DNASE1L2 RHBDL1 MIR4717 ZNF598 MIR4516 HBZ PRSS27 FAHD1 RPS2 RPL23AP5 TPSB2 LMF1 FAM234A E4F1 ABCA17P TBC1D24 RPUSD1 HBA1 CRAMP1 LOC100134368 UNKL LOC729652 LUC7L NPRL3 LINC00235 RAB40C METTL26 TELO2 RGS11 TBL3 UBE2I SSTR5 PTX4 HBQ1 RHOT2 AMDHD2 ECI1 C16orf59 HAGHL MLST8 METRN
dgv4859n54 Chr.16:1971892 - 2264400 on Build GRCh38 Loss LOC105371049 ZNF598 SYNGR3 MIR1225 MIR4516 E4F1 MIR3180-5 NPW SLC9A3R2 PKD1 NTHL1 BRICD5 PGP SNHG19 CASKIN1 GFER NOXO1 SNORD60 MIR6511B1 TBL3 TSC2 RAB26 ECI1 RNPS1 DNASE1L2 TRAF7 MLST8
dgv4861n54 Chr.16:2083900 - 2246850 on Build GRCh38 Loss PGP LOC105371049 SNHG19 CASKIN1 MIR1225 MIR4516 SNORD60 MIR6511B1 E4F1 MIR3180-5 TSC2 RAB26 ECI1 DNASE1L2 TRAF7 MLST8 PKD1 BRICD5
dgv4863n54 Chr.16:2141733 - 2274302 on Build GRCh38 Loss MIR3677 PGP SNHG19 LOC106660606 CASKIN1 SNORD60 E4F1 RAB26 ECI1 RNPS1 DNASE1L2 TRAF7 MLST8 MIR940 BRICD5
nsv457349 Chr.16:2055054 - 2200730 on Build GRCh38 Loss LOC105371049 MIR6511B1 SNHG19 MIR3180-5 TSC2 CASKIN1 RAB26 MIR1225 MIR4516 TRAF7 SNORD60 PKD1
nsv457351 Chr.16:2156590 - 2274302 on Build GRCh38 Loss MIR3677 PGP E4F1 LOC106660606 CASKIN1 ECI1 RNPS1 DNASE1L2 TRAF7 MLST8 MIR940 BRICD5
nsv1052260 Chr.16:2074546 - 2629655 on Build GRCh38 Gain MIR3677 LOC652276 LOC105371049 LOC106660606 MIR4717 MIR1225 NTN3 MIR4516 MIR6767 MIR3178 PDPK1 E4F1 MIR3180-5 ABCA17P TBC1D24 PKD1 CCNF BRICD5 PGP SNHG19 CASKIN1 LOC729652 CEMP1 SNORD60 MIR6511B1 ABCA3 TSC2 RAB26 ATP6V0C MIR6768 AMDHD2 ECI1 C16orf59 RNPS1 DNASE1L2 TRAF7 MLST8 MIR940
nsv952902 Chr.16:2143400 - 2339999 on Build GRCh38 Deletion MIR3677 PGP SNHG19 LOC106660606 MIR4717 CASKIN1 SNORD60 ABCA3 E4F1 RAB26 ECI1 RNPS1 DNASE1L2 TRAF7 MLST8 MIR940 BRICD5

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More Information


Set Membership:

 Intragenic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

scaffold/adaptor protein

Gene Ontology Categories:

Function(s) Process(es)


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