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Gene Symbol
CLIC1
Assay Reference Genome
Location

Chr.6:31733681 on build GRCh38
Cytoband
6p21.33
Assay ID Hs00469002_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 1192

Gene Name:

 chloride intracellular channel 1

Gene Aliases:

 G6, NCC27

Location:

 Chr.6:31730581-31737318 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 4 - Exon 5
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
CLIC1 NM_001287593.1 NP_001274522.1
NM_001287594.1 NP_001274523.1
NM_001288.4 NP_001279.2
AF034607.1 AAD20437.1
AF109197.1 AAD26137.1
AI192421.1
AK129773.1
AK223379.1 BAD97099.1
AK314014.1
BC064527.1 AAH64527.1
BC095469.1 AAH95469.1
CB124154.1
CR542071.1 CAG46868.1
CX783058.1
HY057217.1
U93205.1 AAC25675.1
X87689.1 CAA61020.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv1126749 Chr.6:31457323 - 32594423 on Build GRCh38 Deletion MCCD1 C4B SKIV2L PPT2-EGFL8 DDAH2 TNF C6orf25 C6orf47 MIR6833 EHMT2 AGPAT1 BTNL2 HLA-DRB6 HSPA1A SNORD48 STK19 LY6G6C MSH5-SAPCD1 BAG6 CFB PPT2 NEU1 LTB SAPCD1 DDX39B-AS1 C2-AS1 FKBPL MIR1236 ATP6V1G2 SNORD84 CYP21A1P SNORD117 CLIC1 LY6G5B RNF5 ATP6V1G2-DDX39B DDX39B HSPA1L LSM2 LY6G6E CSNK2B GPANK1 CYP21A2 MIR6721 NOTCH4 ATF6B LOC101929163 NFKBIL1 LY6G6F VARS PRRT1 MIR4646 C4A TNXB AGER TNXA LOC100287329 C6orf10 GPSM3 MIR6832 LOC100507547 SNORD52 LY6G5C HLA-DRB1 HLA-DRB5 SLC44A4 HLA-DRA DXO SAPCD1-AS1 C6orf48 HCG26 VWA7 PBX2 HSPA1B C2 SNORA38 HCG23 ZBTB12 ABHD16A LST1 MSH5 HCP5 PRRC2A LTA MICB EGFL8 NELFE AIF1 LY6G6D LOC102725068 APOM NCR3
nsv1073969 Chr.6:31456422 - 33480523 on Build GRCh38 Deletion TAP2 SKIV2L TNF C6orf25 C6orf47 EHMT2 AGPAT1 HLA-DRB6 HLA-DQA2 HLA-DPB2 SNORD48 STK19 WDR46 LY6G6C RING1 CFB LTB DDX39B-AS1 C2-AS1 HCG24 FKBPL MIR1236 ATP6V1G2 SNORD84 CYP21A1P SNORD117 CLIC1 RNF5 DAXX ATP6V1G2-DDX39B DDX39B LSM2 PSMB8-AS1 CSNK2B CYP21A2 MIR6721 NOTCH4 HLA-DQB2 LOC101929163 NFKBIL1 LY6G6F VARS PRRT1 C4A LOC100294145 AGER TNXA GPSM3 MIR6832 MIR3135B HLA-DRB1 HLA-DRB5 PSMB8 VPS52 SLC44A4 HLA-DRA DXO RGL2 SAPCD1-AS1 MIR6873 HCG26 VWA7 PBX2 SNORA38 HCG23 ZBTB12 HLA-DQA1 B3GALT4 ABHD16A MSH5 MIR219A1 LTA LY6G6D RXRB HLA-DOA LOC102725068 MCCD1 HLA-DMA C4B ZBTB22 KIFC1 CUTA PPT2-EGFL8 DDAH2 TAPBP ZBTB9 MIR6833 BTNL2 HLA-DMB HSPA1A PHF1 TAP1 MSH5-SAPCD1 BAG6 COL11A2 PPT2 NEU1 SAPCD1 RPS18 HSD17B8 LY6G5B HSPA1L LY6G6E HLA-DQB1-AS1 HLA-DOB GPANK1 BRD2 ATF6B MIR4646 TNXB HLA-DPA1 LOC100287329 C6orf10 MIR6834 SYNGAP1 LOC100507547 SNORD52 LY6G5C PFDN6 C6orf48 HCG25 HSPA1B C2 PPP1R2P1 HLA-DPB1 MIR5004 LST1 HCP5 PRRC2A SLC39A7 MICB EGFL8 NELFE AIF1 PSMB9 HLA-DQB1 APOM NCR3
dgv10403n54 Chr.6:31312324 - 32049763 on Build GRCh38 Loss MCCD1 C4B SKIV2L DDAH2 TNF C6orf25 C6orf47 EHMT2 HSPA1A SNORD48 STK19 LY6G6C MSH5-SAPCD1 BAG6 CFB NEU1 LTB SAPCD1 DDX39B-AS1 C2-AS1 MIR1236 ATP6V1G2 SNORD84 CYP21A1P SNORD117 CLIC1 LY6G5B ATP6V1G2-DDX39B DDX39B HSPA1L LSM2 LY6G6E CSNK2B GPANK1 CYP21A2 MICA NFKBIL1 MIR6891 LY6G6F VARS MIR4646 C4A TNXB TNXA LOC100287329 MIR6832 SNORD52 LY6G5C SLC44A4 DXO SAPCD1-AS1 C6orf48 HCG26 VWA7 HSPA1B C2 SNORA38 ZBTB12 ABHD16A LST1 MSH5 HCP5 PRRC2A HLA-B LTA MICB NELFE AIF1 LY6G6D LOC102725068 APOM NCR3
nsv1112900 Chr.6:31455323 - 33480423 on Build GRCh38 Deletion TAP2 SKIV2L TNF C6orf25 C6orf47 EHMT2 AGPAT1 HLA-DRB6 HLA-DQA2 HLA-DPB2 SNORD48 STK19 WDR46 LY6G6C RING1 CFB LTB DDX39B-AS1 C2-AS1 HCG24 FKBPL MIR1236 ATP6V1G2 SNORD84 CYP21A1P SNORD117 CLIC1 RNF5 DAXX ATP6V1G2-DDX39B DDX39B LSM2 PSMB8-AS1 CSNK2B CYP21A2 MIR6721 NOTCH4 HLA-DQB2 LOC101929163 NFKBIL1 LY6G6F VARS PRRT1 C4A LOC100294145 AGER TNXA GPSM3 MIR6832 MIR3135B HLA-DRB1 HLA-DRB5 PSMB8 VPS52 SLC44A4 HLA-DRA DXO RGL2 SAPCD1-AS1 MIR6873 HCG26 VWA7 PBX2 SNORA38 HCG23 ZBTB12 HLA-DQA1 B3GALT4 ABHD16A MSH5 MIR219A1 LTA LY6G6D RXRB HLA-DOA LOC102725068 MCCD1 HLA-DMA C4B ZBTB22 KIFC1 CUTA PPT2-EGFL8 DDAH2 TAPBP ZBTB9 MIR6833 BTNL2 HLA-DMB HSPA1A PHF1 TAP1 MSH5-SAPCD1 BAG6 COL11A2 PPT2 NEU1 SAPCD1 RPS18 HSD17B8 LY6G5B HSPA1L LY6G6E HLA-DQB1-AS1 HLA-DOB GPANK1 BRD2 ATF6B MIR4646 TNXB HLA-DPA1 LOC100287329 C6orf10 MIR6834 SYNGAP1 LOC100507547 SNORD52 LY6G5C PFDN6 C6orf48 HCG25 HSPA1B C2 PPP1R2P1 HLA-DPB1 MIR5004 LST1 HCP5 PRRC2A SLC39A7 MICB EGFL8 NELFE AIF1 PSMB9 HLA-DQB1 APOM NCR3
dgv10404n54 Chr.6:31312550 - 32516591 on Build GRCh38 Loss MCCD1 C4B SKIV2L PPT2-EGFL8 DDAH2 TNF C6orf25 C6orf47 MIR6833 EHMT2 AGPAT1 BTNL2 HSPA1A SNORD48 STK19 LY6G6C MSH5-SAPCD1 BAG6 CFB PPT2 NEU1 LTB SAPCD1 DDX39B-AS1 C2-AS1 FKBPL MIR1236 ATP6V1G2 SNORD84 CYP21A1P SNORD117 CLIC1 LY6G5B RNF5 ATP6V1G2-DDX39B DDX39B HSPA1L LSM2 LY6G6E CSNK2B GPANK1 CYP21A2 MIR6721 NOTCH4 MICA ATF6B LOC101929163 NFKBIL1 MIR6891 LY6G6F VARS PRRT1 MIR4646 C4A TNXB AGER TNXA LOC100287329 C6orf10 GPSM3 MIR6832 LOC100507547 SNORD52 LY6G5C SLC44A4 HLA-DRA DXO SAPCD1-AS1 C6orf48 HCG26 VWA7 PBX2 HSPA1B C2 SNORA38 HCG23 ZBTB12 ABHD16A LST1 MSH5 HCP5 PRRC2A HLA-B LTA MICB EGFL8 NELFE AIF1 LY6G6D LOC102725068 APOM NCR3

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