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See other CABP5 CNV Assays ›
Gene Symbol
CABP5
Assay Reference Genome
Location

Chr.19:48040726 on build GRCh38
Cytoband
19q13.33
Assay ID Hs00477961_cn
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Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 56344

Gene Name:

 calcium binding protein 5

Gene Aliases:

 CABP3

Location:

 Chr.19:48029383-48048342 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 4 - Exon 5
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
CABP5 NM_019855.4 NP_062829.1
XM_017026992.1 XP_016882481.1
AA318398.1
AF169159.1 AAF25793.1
BC126133.1
BC126135.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv833853 Chr.19:47982539 - 48184317 on Build GRCh38 Loss ELSPBP1 C19orf68 PLA2G4C-AS1 CABP5 PLA2G4C BSPH1 LIG1
nsv9739 Chr.19:47901840 - 50143063 on Build GRCh38 Gain+Loss PTOV1 PPFIA3 GFY PRRG2 FUT2 MED25 SNAR-A7 SNAR-C3 SEC1P SIGLEC11 SNAR-B1 FCGRT CGB7 LOC101059948 ELSPBP1 KCNA7 AKT1S1 SNAR-A13 PRMT1 FLT3LG TRPM4 SNAR-A1 RCN3 VRK3 SULT2B1 TBC1D17 BSPH1 LOC100287477 FLJ26850 RASIP1 CD37 ATF5 LOC105447645 PLA2G4C-AS1 SYNGR4 GYS1 SNAR-A6 SNAR-C2 PLEKHA4 SNAR-G2 MIR4324 TEAD2 SNAR-A8 PTOV1-AS1 RPL18 FTL CARD8-AS1 FUZ SNAR-A3 AP2A1 SNAR-G1 LHB RUVBL2 SPACA4 MIR6800 SIGLEC16 SNAR-A4 FAM83E ZNF114 CCDC155 CCDC114 SNAR-A14 MIR150 CGB1 DKKL1 LIN7B CARD8 NUCB1-AS1 RPL13A HRC MIR6799 NTN5 ZNF473 CA11 TMEM143 NUCB1 CPT1C BAX FGF21 C19orf68 DBP SNORD33 LOC101928295 SNAR-D SNORD35A EMP3 TSKS IRF3 CGB3 SNAR-A12 GRWD1 SNORD35B DHDH PTOV1-AS2 KDELR1 RPS11 SNAR-C4 SCAF1 NUP62 BCAT2 SNAR-B2 KCNJ14 SLC17A7 NOSIP BCL2L12 PRR12 PPP1R15A MAMSTR IL4I1 SLC6A16 CGB2 ALDH16A1 CABP5 NTF4 CGB5 PIH1D1 SNAR-A9 MIR4750 SNAR-A11 MIR5088 SNAR-C5 GRIN2D PNKP SNAR-A2 SNAR-A10 HSD17B14 PLA2G4C MIR6798 MIR4749 IZUMO1 LIG1 CYTH2 SNAR-A5 CGB8 SNORD34 ADM5 SNAR-C1 SNORD32A C19orf73 MIR4751 SNRNP70 TULP2 LMTK3 RRAS FUT1 PTH2 LOC105372430 SPHK2
dgv3610n100 Chr.19:48024325 - 48062810 on Build GRCh38 Gain ELSPBP1 PLA2G4C-AS1 CABP5 PLA2G4C
esv34181 Chr.19:48009377 - 48416682 on Build GRCh38 Loss ELSPBP1 CARD8 CARD8-AS1 TMEM143 PLA2G4C-AS1 CABP5 SYNGR4 KDELR1 C19orf68 GRIN2D PLA2G4C ZNF114 EMP3 LIG1 CCDC114
nsv1062163 Chr.19:48040339 - 48075632 on Build GRCh38 Gain PLA2G4C-AS1 CABP5 PLA2G4C
nsv1058785 Chr.19:48004749 - 48075632 on Build GRCh38 Gain ELSPBP1 PLA2G4C-AS1 CABP5 PLA2G4C
esv3893228 Chr.19:48002211 - 48072851 on Build GRCh38 Loss ELSPBP1 PLA2G4C-AS1 CABP5 PLA2G4C
nsv579901 Chr.19:48033582 - 48046691 on Build GRCh38 Loss CABP5
nsv1058622 Chr.19:47798576 - 48077885 on Build GRCh38 Gain ELSPBP1 SNAR-A12 SNAR-A13 SULT2A1 PLA2G4C-AS1 CABP5 SNAR-C1 SNAR-A3 CRX LINC01595 SNAR-C5 SNAR-C4 TPRX1 SNAR-A1 SNAR-C3 SNAR-C2 SNAR-A2 PLA2G4C BSPH1

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More Information


Additional Information:

For this assay, SNP(s) [rs115620220] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Non-exonic DGV Variation

Gene Ontology Categories:

Function(s) Process(es)


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