Hs00516078_cn

• Gene Symbol: CTDP1
• Assay Reference Genome Location: Chr.18:79714513 on build GRCh38
• Cytoband: 18q23

Target Gene Details

• Entrez Gene ID: 9150
• Gene Name: CTD phosphatase subunit 1
• Gene Aliases: CCFDN, FCP1
• Location: Chr.18:79679801-79754510 on Build GRCh38
• Assay Gene Location: Overlaps Intron 9 - Exon 10

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
CTDP1	NM_001202504.1			NP_001189433.1
	NM_001318511.1			NP_001305440.1
	NM_004715.4			NP_004706.3
	NM_048368.3			NP_430255.2
	XM_011526261.1			XP_011524563.1
	XM_017026078.1			XP_016881567.1
	AF081287.1			AAC64549.1
	AF154115.1			AAD42088.1
	BC015010.1			AAH15010.1
	BC052576.1			AAH52576.1
	BC063447.1			AAH63447.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv509709	Chr.18:79685368 - 79838375 on Build GRCh38	Insertion	CTDP1 LOC105376875 KCNG2
nsv428359	Chr.18:79277548 - 80255221 on Build GRCh38	Gain	CTDP1 PQLC1 LOC284240 HSBP1L1 LOC284241 PARD6G-AS1 TXNL4A KCNG2 LOC107985149 RBFADN RBFA LOC105376875 NFATC1 PARD6G ADNP2 ATP9B
nsv525694	Chr.18:79395184 - 79961125 on Build GRCh38	Loss	CTDP1 LOC105376875 PQLC1 LOC284240 LOC284241 NFATC1 KCNG2
nsv470437	Chr.18:79657934 - 80103778 on Build GRCh38	Loss	RBFADN CTDP1 RBFA LOC105376875 PQLC1 HSBP1L1 LOC284241 TXNL4A KCNG2
nsv519406	Chr.18:79630343 - 79897319 on Build GRCh38	Gain	CTDP1 LOC105376875 LOC284241 KCNG2
nsv1065902	Chr.18:78538045 - 80257174 on Build GRCh38	Gain	CTDP1 SALL3 PQLC1 LOC284240 HSBP1L1 LOC284241 PARD6G-AS1 TXNL4A LOC100996274 KCNG2 LOC107985149 RBFADN RBFA LOC105376875 NFATC1 PARD6G ADNP2 ATP9B
nsv1064506	Chr.18:79580427 - 79773771 on Build GRCh38	Gain	CTDP1 LOC105376875 LOC284240 LOC284241
nsv1061450	Chr.18:79703531 - 80135801 on Build GRCh38	Gain	RBFADN CTDP1 RBFA PQLC1 HSBP1L1 TXNL4A ADNP2 KCNG2
nsv1066888	Chr.18:79643023 - 79769924 on Build GRCh38	Gain	CTDP1 LOC105376875 LOC284241

More Information

• Set Membership: Intragenic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

protein phosphatase

Gene Ontology Categories:

Process(es)

transcription from RNA polymerase II promoter
transcription elongation from RNA polymerase II promoter
protein dephosphorylation
exit from mitosis
positive regulation of viral transcription
cell division
negative regulation of cell growth involved in cardiac muscle cell development
dephosphorylation of RNA polymerase II C-terminal domain

Function(s)

phosphoprotein phosphatase activity
protein binding
CTD phosphatase activity