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See other MSH5-SAPCD1 CNV Assays ›
Gene Symbol
MSH5-SAPCD1
Assay Reference Genome
Location

Chr.6:31764828 on build GRCh38
Cytoband
6p21.33
Assay ID Hs00525780_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 100532732

Gene Name:

 MSH5-SAPCD1 readthrough (NMD candidate)

Gene Aliases:

 MSH5-C6orf26

Location:

 Chr.6:31739948-31764850 on Build GRCh38

Assay Gene Location:

 Overlaps - Exon 29
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
MSH5-SAPCD1 NR_037846.1
AJ245661.1 CAB52406.1
AL122094.1 CAB59262.1

Target Gene Details

Entrez Gene ID:

 401251

Gene Name:

 suppressor APC domain containing 1

Gene Aliases:

 C6orf26, NG23

Location:

 Chr.6:31762996-31764850 on Build GRCh38

Assay Gene Location:

 Overlaps - Exon 5
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SAPCD1 NM_001039651.1 NP_001034740.1
AI765046.1

Target Gene Details

Entrez Gene ID:

 104413891

Gene Name:

 SAPCD1 antisense RNA 1

Gene Aliases:

 C6orf26-AS1

Location:

 Chr.6:31764135-31765588 on Build GRCh38

Assay Gene Location:

 Within Intron 1
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SAPCD1-AS1 NR_126423.1
BM509003.1
BU680278.1

Target Gene Details

Entrez Gene ID:

 80737

Gene Name:

 von Willebrand factor A domain containing 7

Gene Aliases:

 C6orf27, G7c, NG37

Location:

 Chr.6:31764135-31777331 on Build GRCh38

Assay Gene Location:

 Within Exon 16
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
VWA7 XM_005249427.2 16 3758 XP_005249484.1
XM_017011327.1 15 3793 XP_016866816.1
XM_017011328.1 16 3904 XP_016866817.1
XM_017011329.1 14 3302 XP_016866818.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv1126749 Chr.6:31457323 - 32594423 on Build GRCh38 Deletion SKIV2L LTB DDX39B-AS1 C6orf25 MIR4646 LY6G6D HLA-DRB6 C2-AS1 HCG23 LY6G5B LY6G6F MSH5 SNORA38 DDAH2 NELFE LOC100287329 GPSM3 LSM2 LST1 TNF NCR3 VARS ZBTB12 TNXB DXO CFB HSPA1A VWA7 CLIC1 MIR6833 GPANK1 C6orf48 FKBPL MIR6832 APOM ATF6B PPT2-EGFL8 SNORD84 HLA-DRA ABHD16A SNORD48 HSPA1L NEU1 STK19 PRRC2A SNORD52 BTNL2 HLA-DRB5 SAPCD1-AS1 EHMT2 HCP5 SNORD117 BAG6 C4B C2 C6orf47 TNXA NFKBIL1 LOC101929163 MSH5-SAPCD1 SLC44A4 LOC102725068 PRRT1 AGER C6orf10 NOTCH4 ATP6V1G2 PPT2 MICB LY6G6E PBX2 HLA-DRB1 CSNK2B SAPCD1 AGPAT1 LY6G6C MIR6721 LTA CYP21A2 C4A ATP6V1G2-DDX39B EGFL8 DDX39B CYP21A1P AIF1 RNF5 HCG26 LY6G5C LOC100507547 MIR1236 MCCD1 HSPA1B
esv2763547 Chr.6:31748105 - 31770701 on Build GRCh38 Loss MSH5 SAPCD1 MSH5-SAPCD1 VWA7 SAPCD1-AS1
nsv1073969 Chr.6:31456422 - 33480523 on Build GRCh38 Deletion BRD2 LTB DDX39B-AS1 C6orf25 DAXX HCG23 B3GALT4 LY6G5B MSH5 DDAH2 VPS52 RPS18 NELFE WDR46 KIFC1 LST1 TNF NCR3 VARS SLC39A7 TNXB PPP1R2P1 CFB HLA-DQA1 HSPA1A VWA7 HLA-DPB1 GPANK1 MIR6832 ATF6B PPT2-EGFL8 SNORD84 ABHD16A HLA-DMA SNORD48 HSPA1L NEU1 STK19 SNORD52 TAPBP BTNL2 SAPCD1-AS1 HCG24 PFDN6 HLA-DQA2 C6orf47 TNXA MSH5-SAPCD1 MIR5004 LOC102725068 PRRT1 RXRB AGER C6orf10 ATP6V1G2 RGL2 PBX2 CSNK2B SAPCD1 AGPAT1 PHF1 HLA-DQB2 MIR6721 CYP21A2 ATP6V1G2-DDX39B EGFL8 CYP21A1P HLA-DOB RNF5 LY6G5C HSD17B8 LOC100507547 TAP2 COL11A2 TAP1 SKIV2L HLA-DOA HLA-DQB1-AS1 MIR4646 LY6G6D HLA-DRB6 C2-AS1 MIR3135B HLA-DMB LY6G6F MIR219A1 SNORA38 SYNGAP1 LOC100294145 LOC100287329 GPSM3 LSM2 ZBTB12 DXO HLA-DQB1 CLIC1 MIR6833 C6orf48 FKBPL APOM PSMB8-AS1 RING1 PSMB8 HLA-DRA PRRC2A MIR6834 ZBTB22 HLA-DRB5 EHMT2 HCP5 SNORD117 BAG6 PSMB9 C4B C2 NFKBIL1 MIR6873 LOC101929163 SLC44A4 NOTCH4 HLA-DPB2 PPT2 MICB LY6G6E HLA-DRB1 ZBTB9 LY6G6C LTA C4A HLA-DPA1 DDX39B CUTA AIF1 HCG25 HCG26 MIR1236 MCCD1 HSPA1B
dgv10403n54 Chr.6:31312324 - 32049763 on Build GRCh38 Loss SKIV2L LTB DDX39B-AS1 C6orf25 MIR4646 LY6G6D C2-AS1 MICA LY6G5B LY6G6F MSH5 MIR6891 SNORA38 DDAH2 NELFE LOC100287329 LSM2 LST1 TNF NCR3 VARS ZBTB12 TNXB DXO CFB HSPA1A VWA7 CLIC1 GPANK1 C6orf48 MIR6832 APOM SNORD84 ABHD16A SNORD48 HSPA1L NEU1 STK19 PRRC2A SNORD52 SAPCD1-AS1 EHMT2 HCP5 SNORD117 BAG6 C4B C2 C6orf47 TNXA NFKBIL1 MSH5-SAPCD1 SLC44A4 HLA-B LOC102725068 ATP6V1G2 MICB LY6G6E CSNK2B SAPCD1 LY6G6C LTA CYP21A2 C4A ATP6V1G2-DDX39B DDX39B CYP21A1P AIF1 HCG26 LY6G5C MIR1236 MCCD1 HSPA1B
nsv1112900 Chr.6:31455323 - 33480423 on Build GRCh38 Deletion BRD2 LTB DDX39B-AS1 C6orf25 DAXX HCG23 B3GALT4 LY6G5B MSH5 DDAH2 VPS52 RPS18 NELFE WDR46 KIFC1 LST1 TNF NCR3 VARS SLC39A7 TNXB PPP1R2P1 CFB HLA-DQA1 HSPA1A VWA7 HLA-DPB1 GPANK1 MIR6832 ATF6B PPT2-EGFL8 SNORD84 ABHD16A HLA-DMA SNORD48 HSPA1L NEU1 STK19 SNORD52 TAPBP BTNL2 SAPCD1-AS1 HCG24 PFDN6 HLA-DQA2 C6orf47 TNXA MSH5-SAPCD1 MIR5004 LOC102725068 PRRT1 RXRB AGER C6orf10 ATP6V1G2 RGL2 PBX2 CSNK2B SAPCD1 AGPAT1 PHF1 HLA-DQB2 MIR6721 CYP21A2 ATP6V1G2-DDX39B EGFL8 CYP21A1P HLA-DOB RNF5 LY6G5C HSD17B8 LOC100507547 TAP2 COL11A2 TAP1 SKIV2L HLA-DOA HLA-DQB1-AS1 MIR4646 LY6G6D HLA-DRB6 C2-AS1 MIR3135B HLA-DMB LY6G6F MIR219A1 SNORA38 SYNGAP1 LOC100294145 LOC100287329 GPSM3 LSM2 ZBTB12 DXO HLA-DQB1 CLIC1 MIR6833 C6orf48 FKBPL APOM PSMB8-AS1 RING1 PSMB8 HLA-DRA PRRC2A MIR6834 ZBTB22 HLA-DRB5 EHMT2 HCP5 SNORD117 BAG6 PSMB9 C4B C2 NFKBIL1 MIR6873 LOC101929163 SLC44A4 NOTCH4 HLA-DPB2 PPT2 MICB LY6G6E HLA-DRB1 ZBTB9 LY6G6C LTA C4A HLA-DPA1 DDX39B CUTA AIF1 HCG25 HCG26 MIR1236 MCCD1 HSPA1B
dgv10404n54 Chr.6:31312550 - 32516591 on Build GRCh38 Loss SKIV2L LTB DDX39B-AS1 C6orf25 MIR4646 LY6G6D C2-AS1 HCG23 MICA LY6G5B LY6G6F MSH5 MIR6891 SNORA38 DDAH2 NELFE LOC100287329 GPSM3 LSM2 LST1 TNF NCR3 VARS ZBTB12 TNXB DXO CFB HSPA1A VWA7 CLIC1 MIR6833 GPANK1 C6orf48 FKBPL MIR6832 APOM ATF6B PPT2-EGFL8 SNORD84 HLA-DRA ABHD16A SNORD48 HSPA1L NEU1 STK19 PRRC2A SNORD52 BTNL2 SAPCD1-AS1 EHMT2 HCP5 SNORD117 BAG6 C4B C2 C6orf47 TNXA NFKBIL1 LOC101929163 MSH5-SAPCD1 SLC44A4 HLA-B LOC102725068 PRRT1 AGER C6orf10 NOTCH4 ATP6V1G2 PPT2 MICB LY6G6E PBX2 CSNK2B SAPCD1 AGPAT1 LY6G6C MIR6721 LTA CYP21A2 C4A ATP6V1G2-DDX39B EGFL8 DDX39B CYP21A1P AIF1 RNF5 HCG26 LY6G5C LOC100507547 MIR1236 MCCD1 HSPA1B

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More Information


Set Membership:

 Intragenic Exonic Intronic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

DNA metabolism protein

Gene Ontology Categories:

Function(s) Process(es)


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