Hs00530026_cn

• Gene Symbol: PCDHA1
• Assay Reference Genome Location: Chr.5:140856624 on build GRCh38
• Cytoband: 5q31.3

Target Gene Details

• Entrez Gene ID: 56147
• Gene Name: protocadherin alpha 1
• Gene Aliases: PCDH-ALPHA1
• Location: Chr.5:140786136-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA1	NM_018900.3			NP_061723.1
	NM_031411.2			NP_113599.1
	AF152305.1			AAD43699.1
	AF169695.1			AAF89692.1

Target Gene Details

• Entrez Gene ID: 56139
• Gene Name: protocadherin alpha 10
• Gene Aliases: CNR8, CNRN8, CNRS8, CRNR8, PCDH-ALPHA10
• Location: Chr.5:140855883-141012344 on Build GRCh38
• Assay Gene Location: Within Exon 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA10	NM_018901.3	1	742	NP_061724.1
	NM_031859.2	1	742	NP_114065.1
	NM_031860.2	1	742	NP_114066.1
	AF152306.1	1	576	AAD43700.1
	AF152475.1	1	576	AAD43736.1
	AF169689.1	1	576	AAF89329.1
	BC130447.1	1	615

Target Gene Details

• Entrez Gene ID: 56146
• Gene Name: protocadherin alpha 2
• Gene Aliases: PCDH-ALPHA2
• Location: Chr.5:140794859-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA2	NM_018905.2			NP_061728.1
	AF152310.1			AAD43704.1

Target Gene Details

• Entrez Gene ID: 56145
• Gene Name: protocadherin alpha 3
• Gene Aliases: PCDH-ALPHA3
• Location: Chr.5:140801198-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA3	NM_018906.2			NP_061729.1
	AF152311.1			AAD43705.1

Target Gene Details

• Entrez Gene ID: 56144
• Gene Name: protocadherin alpha 4
• Gene Aliases: CNR1, CNRN1, CRNR1, PCDH-ALPHA4
• Location: Chr.5:140807074-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA4	NM_018907.3			NP_061730.1
	AB208925.1			BAD92162.1
	AF152312.1			AAD43706.1

Target Gene Details

• Entrez Gene ID: 56143
• Gene Name: protocadherin alpha 5
• Gene Aliases: CNR6, CNRN6, CNRS6, CRNR6, PCDH-ALPHA5
• Location: Chr.5:140821776-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA5	NM_018908.2			NP_061731.1
	AB208863.1			BAD92100.1
	AF152313.1			AAD43707.1
	BC033735.1			AAH33735.1

Target Gene Details

• Entrez Gene ID: 56142
• Gene Name: protocadherin alpha 6
• Gene Aliases: CNR2, CNRN2, CNRS2, CRNR2, PCDH-ALPHA6
• Location: Chr.5:140827922-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA6	NM_018909.3			NP_061732.1
	NM_031849.2			NP_114037.1
	AB209205.1			BAD92442.1
	AF152314.1			AAD43708.1
	AF169694.1			AAF89691.1
	BC036674.2			AAH36674.1

Target Gene Details

• Entrez Gene ID: 56141
• Gene Name: protocadherin alpha 7
• Gene Aliases: CNR4, CNRN4, CNRS4, CRNR4, PCDH-ALPHA7
• Location: Chr.5:140834384-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA7	NM_018910.2			NP_061733.1
	AF152315.1			AAD43709.1

Target Gene Details

• Entrez Gene ID: 56140
• Gene Name: protocadherin alpha 8
• Gene Aliases: PCDH-ALPHA8
• Location: Chr.5:140841322-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA8	NM_018911.2			NP_061734.1
	AF152316.1			AAD43710.1

Target Gene Details

• Entrez Gene ID: 9752
• Gene Name: protocadherin alpha 9
• Gene Aliases: PCDH-ALPHA9
• Location: Chr.5:140847772-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA9	NM_031857.1			NP_114063.1
	AF152317.1			AAD43711.1
	AJ007610.1			CAC22257.1
	AK314303.1
	BC104802.1			AAI04803.1
	BC104804.1			AAI04805.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv819207	Chr.5:140842721 - 140859461 on Build GRCh38	Gain	PCDHA2 PCDHA7 PCDHA3 PCDHA5 PCDHA1 PCDHA4 PCDHA8 PCDHA10 PCDHA6 PCDHA9
esv33939	Chr.5:140837491 - 140859238 on Build GRCh38	Gain+Loss	PCDHA2 PCDHA7 PCDHA3 PCDHA5 PCDHA1 PCDHA4 PCDHA8 PCDHA10 PCDHA6 PCDHA9
nsv10753	Chr.5:140842575 - 140859579 on Build GRCh38	Gain	PCDHA2 PCDHA7 PCDHA3 PCDHA5 PCDHA1 PCDHA4 PCDHA8 PCDHA10 PCDHA6 PCDHA9
dgv10101n54	Chr.5:140851652 - 140856743 on Build GRCh38	Loss	PCDHA2 PCDHA7 PCDHA3 PCDHA5 PCDHA1 PCDHA4 PCDHA8 PCDHA10 PCDHA6 PCDHA9
esv2759382	Chr.5:140777355 - 141449115 on Build GRCh38	Gain	PCDHB9 PCDHA3 PCDHGA11 TAF7 PCDHGB1 PCDHGB8P PCDHB2 PCDHA5 PCDHB1 PCDHB10 PCDHA12 PCDHA8 PCDHA11 PCDHAC2 PCDHGA7 PCDHAC1 PCDHGB2 PCDHB18P PCDHGA3 PCDHB7 PCDHB17P PCDHB16 PCDHB3 PCDHGA6 PCDHGA9 PCDHGB5 PCDHGB6 PCDHB6 PCDHGA2 PCDHA6 PCDHA13 PCDHB13 PCDHB11 PCDHB5 PCDHB8 PCDHA2 SLC25A2 LOC101926905 PCDHGB7 PCDHB4 PCDHGA8 PCDHA1 PCDHA4 PCDHB15 PCDHA10 PCDHGA10 PCDHGA12 PCDHB14 PCDHGA1 PCDHGA4 PCDHGA5 PCDHGB4 PCDHA9 PCDHA7 PCDHB19P PCDHB12 PCDHGB3
dgv1652e212	Chr.5:140839141 - 140864158 on Build GRCh38	Loss	PCDHA2 PCDHA7 PCDHA3 PCDHA5 PCDHA1 PCDHA4 PCDHA8 PCDHA10 PCDHA6 PCDHA9
dgv138e203	Chr.5:140838209 - 140874533 on Build GRCh38	Loss	PCDHA2 PCDHA7 PCDHA3 PCDHA5 PCDHA1 PCDHA4 PCDHA8 PCDHA10 PCDHA6 PCDHA11 PCDHA9
nsv599894	Chr.5:140852761 - 140864165 on Build GRCh38	Loss	PCDHA2 PCDHA7 PCDHA3 PCDHA5 PCDHA1 PCDHA4 PCDHA8 PCDHA10 PCDHA6 PCDHA9
esv3606958	Chr.5:140842689 - 140859762 on Build GRCh38	Loss	PCDHA2 PCDHA7 PCDHA3 PCDHA5 PCDHA1 PCDHA4 PCDHA8 PCDHA10 PCDHA6 PCDHA9
esv2421858	Chr.5:140844251 - 140857963 on Build GRCh38	Deletion	PCDHA2 PCDHA7 PCDHA3 PCDHA5 PCDHA1 PCDHA4 PCDHA8 PCDHA10 PCDHA6 PCDHA9
esv3566721	Chr.5:140840563 - 140861415 on Build GRCh38	Deletion	PCDHA2 PCDHA7 PCDHA3 PCDHA5 PCDHA1 PCDHA4 PCDHA8 PCDHA10 PCDHA6 PCDHA9
nsv514324	Chr.5:140844231 - 140859031 on Build GRCh38	Loss	PCDHA2 PCDHA7 PCDHA3 PCDHA5 PCDHA1 PCDHA4 PCDHA8 PCDHA10 PCDHA6 PCDHA9
esv26168	Chr.5:140842564 - 140859300 on Build GRCh38	Gain	PCDHA2 PCDHA7 PCDHA3 PCDHA5 PCDHA1 PCDHA4 PCDHA8 PCDHA10 PCDHA6 PCDHA9
dgv3182n106	Chr.5:140842552 - 140859353 on Build GRCh38	Deletion	PCDHA2 PCDHA7 PCDHA3 PCDHA5 PCDHA1 PCDHA4 PCDHA8 PCDHA10 PCDHA6 PCDHA9
dgv1043e199	Chr.5:140842260 - 140861207 on Build GRCh38	Deletion	PCDHA2 PCDHA7 PCDHA3 PCDHA5 PCDHA1 PCDHA4 PCDHA8 PCDHA10 PCDHA6 PCDHA9
esv2730839	Chr.5:140842540 - 140859393 on Build GRCh38	Deletion	PCDHA2 PCDHA7 PCDHA3 PCDHA5 PCDHA1 PCDHA4 PCDHA8 PCDHA10 PCDHA6 PCDHA9
dgv10105n54	Chr.5:140853365 - 140857963 on Build GRCh38	Loss	PCDHA2 PCDHA7 PCDHA3 PCDHA5 PCDHA1 PCDHA4 PCDHA8 PCDHA10 PCDHA6 PCDHA9
nsv1135376	Chr.5:140849315 - 140859915 on Build GRCh38	Deletion	PCDHA2 PCDHA7 PCDHA3 PCDHA5 PCDHA1 PCDHA4 PCDHA8 PCDHA10 PCDHA6 PCDHA9
nsv599903	Chr.5:140855278 - 140857963 on Build GRCh38	Loss	PCDHA2 PCDHA7 PCDHA3 PCDHA5 PCDHA1 PCDHA4 PCDHA8 PCDHA10 PCDHA6 PCDHA9
nsv830508	Chr.5:140675388 - 140869073 on Build GRCh38	Loss	VTRNA1-2 PCDHA3 ZMAT2 HARS PCDHA9 PCDHA2 VTRNA1-1 PCDHA7 VTRNA1-3 PCDHA5 PCDHA1 PCDHA4 PCDHA8 PCDHA10 PCDHA6 PCDHA11 HARS2
dgv10097n54	Chr.5:140849850 - 140856743 on Build GRCh38	Loss	PCDHA2 PCDHA7 PCDHA3 PCDHA5 PCDHA1 PCDHA4 PCDHA8 PCDHA10 PCDHA6 PCDHA9
esv3890744	Chr.5:140846323 - 140857963 on Build GRCh38	Loss	PCDHA2 PCDHA7 PCDHA3 PCDHA5 PCDHA1 PCDHA4 PCDHA8 PCDHA10 PCDHA6 PCDHA9
esv29977	Chr.5:140843471 - 140856955 on Build GRCh38	Gain	PCDHA2 PCDHA7 PCDHA3 PCDHA5 PCDHA1 PCDHA4 PCDHA8 PCDHA10 PCDHA6 PCDHA9
dgv10098n54	Chr.5:140850785 - 140856743 on Build GRCh38	Loss	PCDHA2 PCDHA7 PCDHA3 PCDHA5 PCDHA1 PCDHA4 PCDHA8 PCDHA10 PCDHA6 PCDHA9
nsv964954	Chr.5:140856140 - 140858351 on Build GRCh38	Duplication	PCDHA2 PCDHA7 PCDHA3 PCDHA5 PCDHA1 PCDHA4 PCDHA8 PCDHA10 PCDHA6 PCDHA9

More Information

• Set Membership: Intragenic, Exonic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

cadherin

Gene Ontology Categories:

Process(es)

cell adhesion
homophilic cell adhesion via plasma membrane adhesion molecules
nervous system development

Function(s)

calcium ion binding
protein binding