Hs00565765_cn

• Gene Symbol: LOC339059
• Assay Reference Genome Location: Chr.16:88742772 on build GRCh38
• Cytoband: 16q24.3

Target Gene Details

• Entrez Gene ID: 339059
• Gene Name: uncharacterized LOC339059
• Gene Aliases: -
• Location: Chr.16:88742767-88745748 on Build GRCh38
• Assay Gene Location: Overlaps - Exon 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
LOC339059	NR_120387.1
	AK097767.1			BAC05165.1
	BC111769.1			AAI11770.1

Target Gene Details

• Entrez Gene ID: 9780
• Gene Name: piezo type mechanosensitive ion channel component 1
• Gene Aliases: DHS, FAM38A, LMPH3, Mib
• Location: Chr.16:88715338-88785220 on Build GRCh38
• Assay Gene Location: Within Intron 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PIEZO1	NM_001142864.3			NP_001136336.2
	HY165228.1
	KC602455.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv1063024	Chr.16:88707330 - 89238482 on Build GRCh38	Gain	PABPN1L MIR4722 TRAPPC2L CDH15 CTU2 LOC100289580 LOC400558 LOC100129697 APRT ZNF778 PIEZO1 ACSF3 SLC22A31 LOC339059 GALNS CDT1 CBFA2T3 LOC105371409 LOC101927793 LINC00304 LOC107987238
nsv471113	Chr.16:88650665 - 88764428 on Build GRCh38	Loss	RNF166 PIEZO1 MIR4722 SNAI3-AS1 SNAI3 CTU2 LOC339059 LOC100289580 CYBA MVD
dgv3064n100	Chr.16:88683753 - 88846491 on Build GRCh38	Gain	RNF166 PIEZO1 MIR4722 SNAI3-AS1 SNAI3 CTU2 LOC339059 GALNS LOC100289580 CDT1 LOC107987238 APRT
nsv517643	Chr.16:88713767 - 88756339 on Build GRCh38	Loss	PIEZO1 MIR4722 CTU2 LOC339059 LOC100289580
nsv833327	Chr.16:88667431 - 88757621 on Build GRCh38	Loss	RNF166 PIEZO1 MIR4722 SNAI3-AS1 SNAI3 CTU2 LOC339059 LOC100289580
nsv573674	Chr.16:88738775 - 89325907 on Build GRCh38	Gain	PABPN1L TRAPPC2L CDH15 LOC100289580 LOC400558 ANKRD11 LOC100129697 APRT LOC105371414 LOC100287036 ZNF778 PIEZO1 ACSF3 SLC22A31 LOC339059 GALNS CDT1 CBFA2T3 LOC105371409 LOC101927793 LINC00304 LOC107987238
nsv1927	Chr.16:88712585 - 88743583 on Build GRCh38	Insertion	PIEZO1 MIR4722 CTU2 LOC339059 LOC100289580
nsv482951	Chr.16:88633593 - 90228345 on Build GRCh38	Loss	URAHP LOC105371419 MIR4722 SPG7 LOC100289580 CYBA ANKRD11 LOC100129697 FAM157C ZNF778 PIEZO1 ACSF3 ZNF276 CENPBD1 DPEP1 LOC101927817 LOC339059 PRDM7 SNORD68 LOC105371409 SPIRE2 DEF8 SPATA33 AFG3L1P LOC400558 TUBB8P7 GALNS CPNE7 CBFA2T3 RPL13 CHMP1A SNAI3 CDH15 CTU2 MC1R DBNDD1 GAS8 LOC105371414 LOC100287036 SLC22A31 PABPN1L SNAI3-AS1 TRAPPC2L CDK10 GAS8-AS1 APRT VPS9D1-AS1 RNF166 LOC107984817 SPATA2L TCF25 IL17C TUBB3 CDT1 LOC101927793 LINC00304 MVD LOC107987238 FANCA VPS9D1
nsv471114	Chr.16:88688461 - 88756339 on Build GRCh38	Gain	RNF166 PIEZO1 MIR4722 CTU2 LOC339059 LOC100289580
nsv952070	Chr.16:88257295 - 88780192 on Build GRCh38	Deletion	ZC3H18 MIR4722 SNAI3-AS1 SNAI3 CTU2 LOC100289580 CYBA ZFPM1 LOC107984862 ZC3H18-AS1 ZNF469 RNF166 PIEZO1 MIR5189 LOC339059 IL17C MVD
nsv1160442	Chr.16:88708161 - 88778524 on Build GRCh38	Deletion	PIEZO1 MIR4722 CTU2 LOC339059 LOC100289580
nsv573675	Chr.16:88740797 - 88743485 on Build GRCh38	Loss	PIEZO1 LOC339059 LOC100289580
dgv3065n100	Chr.16:88711587 - 88927172 on Build GRCh38	Gain	PABPN1L MIR4722 TRAPPC2L CTU2 LOC100289580 APRT PIEZO1 LOC339059 GALNS CDT1 CBFA2T3 LOC101927793 LOC107987238

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

cation transport
positive regulation of integrin activation
positive regulation of cell-cell adhesion mediated by integrin
cation transmembrane transport

Function(s)

cation channel activity
mechanically-gated ion channel activity