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See other CASKIN1 CNV Assays ›
Gene Symbol
CASKIN1
Assay Reference Genome
Location

Chr.16:2180392 on build GRCh38
Cytoband
16p13.3
Assay ID Hs00572102_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 57524

Gene Name:

 CASK interacting protein 1

Gene Aliases:

 ANKS5A

Location:

 Chr.16:2177183-2196464 on Build GRCh38

Assay Gene Location:

 Within Exon 18
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
CASKIN1 NM_020764.3 18 3008 NP_065815.1
AB037727.1 10 2145 BAA92544.1
AF451977.1 18 3074 AAL49758.1
BC042011.1 AAH42011.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication ABCA3 FBXL16 SPSB3 E4F1 TBC1D24 MIR3176 MAPK8IP3 RHBDF1 NDUFB10 MRPL28 MSRB1 CHTF18 MIR5587 CRAMP1 PTX4 ECI1 MIR662 HBA2 LOC107984876 PGP HAGHL RAB11FIP3 TMEM204 FAM173A TPSAB1 LINC00254 PRR25 CASKIN1 LOC105371049 NUBP2 KCTD5 LOC100134368 RPL3L CLCN7 C16orf59 PDPK1 PIGQ UNKL LOC105371046 SNHG19 MRPS34 RHBDL1 NME4 NARFL PRR35 SNORD60 HBA1 ABCA17P BAIAP3 LMF1 C16orf91 AXIN1 TSC2 CEMP1 BRICD5 HAGH MIR4516 GNG13 GNPTG LOC105371038 TPSD1 RNF151 PRSS27 MPG IFT140 LOC106660606 MIR6767 MIR3177 LOC652276 EME2 TSR3 ZNF598 TRAF7 SSTR5 JMJD8 NHLRC4 PDIA2 MIR6768 LOC107987233 TPSB2 LOC101929280 CCDC78 NPRL3 SNRNP25 PKD1 UBE2I WDR90 IGFALS WASIR2 C1QTNF8 HBQ1 METRN SOX8 LOC729652 LUC7L WFIKKN1 RPS2 MIR940 TELO2 LOC105371047 LOC105371184 MIR3180-5 MIR1225 NTHL1 TBL3 MIR3178 GFER LINC00235 FAM234A RAB40C MIR6859-4 LOC100287175 POLR3K ERVK13-1 MIR3677 AMDHD2 SYNGR3 ATP6V0C SNORA10 TMEM8A HBZ HBM LMF1-AS1 NTN3 MIR4717 SLC9A3R2 RAB26 RPL23AP5 MIR6511B1 NME3 DDX11L10 PRSS29P DECR2 SNHG9 MLST8 TPSG1 RNPS1 HN1L FAHD1 RGS11 MEIOB FLJ42627 RHOT2 DNASE1L2 MSLN SNORA78 STUB1 METTL26 SSTR5-AS1 MCRIP2 SNORA64 RPUSD1 LOC105371045 ARHGDIG CCDC154 NOXO1 CACNA1H NPW CAPN15 WDR24 HS3ST6 CCNF
nsv471072 Chr.16:1971892 - 2317508 on Build GRCh38 Loss LOC105371049 RAB26 ABCA3 MIR6511B1 PKD1 E4F1 SNHG19 MLST8 RNPS1 SNORD60 MIR940 DNASE1L2 TSC2 BRICD5 MIR3180-5 MIR4516 MIR1225 NTHL1 TBL3 GFER ECI1 PGP LOC106660606 MIR3677 NOXO1 SYNGR3 ZNF598 TRAF7 NPW CASKIN1 MIR4717 SLC9A3R2
dgv4861n54 Chr.16:2083900 - 2246850 on Build GRCh38 Loss LOC105371049 RAB26 ECI1 MIR6511B1 PKD1 PGP E4F1 SNHG19 MLST8 SNORD60 TRAF7 DNASE1L2 TSC2 BRICD5 MIR3180-5 CASKIN1 MIR4516 MIR1225
dgv4863n54 Chr.16:2141733 - 2274302 on Build GRCh38 Loss RAB26 ECI1 PGP E4F1 SNHG19 LOC106660606 MLST8 RNPS1 SNORD60 MIR3677 TRAF7 MIR940 DNASE1L2 BRICD5 CASKIN1
nsv457349 Chr.16:2055054 - 2200730 on Build GRCh38 Loss LOC105371049 RAB26 SNORD60 MIR6511B1 PKD1 TRAF7 TSC2 MIR3180-5 CASKIN1 MIR4516 MIR1225 SNHG19
dgv456n67 Chr.16:2175295 - 2181915 on Build GRCh38 Gain TRAF7 CASKIN1
nsv1052260 Chr.16:2074546 - 2629655 on Build GRCh38 Gain LOC105371049 RAB26 ABCA3 MIR6511B1 C16orf59 PKD1 PDPK1 E4F1 TBC1D24 SNHG19 LOC729652 MLST8 RNPS1 SNORD60 ABCA17P MIR940 DNASE1L2 TSC2 CEMP1 BRICD5 MIR3180-5 MIR4516 MIR1225 MIR3178 ECI1 PGP LOC106660606 MIR6767 LOC652276 MIR3677 AMDHD2 ATP6V0C TRAF7 CASKIN1 MIR6768 NTN3 MIR4717 CCNF
nsv457351 Chr.16:2156590 - 2274302 on Build GRCh38 Loss LOC106660606 MLST8 RNPS1 ECI1 MIR3677 TRAF7 MIR940 DNASE1L2 BRICD5 CASKIN1 PGP E4F1
nsv952902 Chr.16:2143400 - 2339999 on Build GRCh38 Deletion RAB26 ABCA3 ECI1 PGP E4F1 SNHG19 LOC106660606 MLST8 RNPS1 SNORD60 MIR3677 TRAF7 MIR940 DNASE1L2 BRICD5 CASKIN1 MIR4717

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More Information


Set Membership:

 Intragenic Exonic DGV Variation

Panther Classification:

Molecular Function -

scaffold/adaptor protein

Gene Ontology Categories:

Function(s) Process(es)


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