Hs00580350_cn

• Gene Symbol: PCDHA1
• Assay Reference Genome Location: Chr.5:140849582 on build GRCh38
• Cytoband: 5q31.3

Target Gene Details

• Entrez Gene ID: 56147
• Gene Name: protocadherin alpha 1
• Gene Aliases: PCDH-ALPHA1
• Location: Chr.5:140786136-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA1	NM_018900.3			NP_061723.1
	NM_031411.2			NP_113599.1
	AF152305.1			AAD43699.1
	AF169695.1			AAF89692.1

Target Gene Details

• Entrez Gene ID: 56146
• Gene Name: protocadherin alpha 2
• Gene Aliases: PCDH-ALPHA2
• Location: Chr.5:140794859-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA2	NM_018905.2			NP_061728.1
	AF152310.1			AAD43704.1

Target Gene Details

• Entrez Gene ID: 56145
• Gene Name: protocadherin alpha 3
• Gene Aliases: PCDH-ALPHA3
• Location: Chr.5:140801198-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA3	NM_018906.2			NP_061729.1
	AF152311.1			AAD43705.1

Target Gene Details

• Entrez Gene ID: 56144
• Gene Name: protocadherin alpha 4
• Gene Aliases: CNR1, CNRN1, CRNR1, PCDH-ALPHA4
• Location: Chr.5:140807074-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA4	NM_018907.3			NP_061730.1
	AB208925.1			BAD92162.1
	AF152312.1			AAD43706.1

Target Gene Details

• Entrez Gene ID: 56143
• Gene Name: protocadherin alpha 5
• Gene Aliases: CNR6, CNRN6, CNRS6, CRNR6, PCDH-ALPHA5
• Location: Chr.5:140821776-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA5	NM_018908.2			NP_061731.1
	AB208863.1			BAD92100.1
	AF152313.1			AAD43707.1
	BC033735.1			AAH33735.1

Target Gene Details

• Entrez Gene ID: 56142
• Gene Name: protocadherin alpha 6
• Gene Aliases: CNR2, CNRN2, CNRS2, CRNR2, PCDH-ALPHA6
• Location: Chr.5:140827922-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA6	NM_018909.3			NP_061732.1
	NM_031849.2			NP_114037.1
	AB209205.1			BAD92442.1
	AF152314.1			AAD43708.1
	AF169694.1			AAF89691.1
	BC036674.2			AAH36674.1

Target Gene Details

• Entrez Gene ID: 56141
• Gene Name: protocadherin alpha 7
• Gene Aliases: CNR4, CNRN4, CNRS4, CRNR4, PCDH-ALPHA7
• Location: Chr.5:140834384-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA7	NM_018910.2			NP_061733.1
	AF152315.1			AAD43709.1

Target Gene Details

• Entrez Gene ID: 56140
• Gene Name: protocadherin alpha 8
• Gene Aliases: PCDH-ALPHA8
• Location: Chr.5:140841322-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA8	NM_018911.2			NP_061734.1
	AF152316.1			AAD43710.1

Target Gene Details

• Entrez Gene ID: 9752
• Gene Name: protocadherin alpha 9
• Gene Aliases: PCDH-ALPHA9
• Location: Chr.5:140847772-141012344 on Build GRCh38
• Assay Gene Location: Within Exon 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA9	NM_014005.4	1	1811	NP_054724.1
	NM_031857.1	1	1811	NP_114063.1
	AB002343.1	1	1811
	AF152317.1	1	1087	AAD43711.1
	AF152487.1	1	1087	AAD43748.1
	AJ007610.1	1	2120	CAC22257.1
	AK314303.1	1	1249
	BC104802.1	1	1180	AAI04803.1
	BC104804.1	1	1180	AAI04805.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv437955	Chr.5:140848387 - 140850586 on Build GRCh38	Loss	PCDHA4 PCDHA6 PCDHA9 PCDHA3 PCDHA8 PCDHA5 PCDHA2 PCDHA1 PCDHA7
nsv964953	Chr.5:140848155 - 140850849 on Build GRCh38	Duplication	PCDHA4 PCDHA6 PCDHA9 PCDHA3 PCDHA8 PCDHA5 PCDHA2 PCDHA1 PCDHA7
nsv819207	Chr.5:140842721 - 140859461 on Build GRCh38	Gain	PCDHA4 PCDHA6 PCDHA9 PCDHA3 PCDHA8 PCDHA5 PCDHA2 PCDHA1 PCDHA10 PCDHA7
dgv1651e212	Chr.5:140838196 - 140852242 on Build GRCh38	Loss	PCDHA4 PCDHA6 PCDHA9 PCDHA3 PCDHA8 PCDHA5 PCDHA2 PCDHA1 PCDHA7
esv33939	Chr.5:140837491 - 140859238 on Build GRCh38	Gain+Loss	PCDHA4 PCDHA6 PCDHA9 PCDHA3 PCDHA8 PCDHA5 PCDHA2 PCDHA1 PCDHA10 PCDHA7
nsv10753	Chr.5:140842575 - 140859579 on Build GRCh38	Gain	PCDHA4 PCDHA6 PCDHA9 PCDHA3 PCDHA8 PCDHA5 PCDHA2 PCDHA1 PCDHA10 PCDHA7
esv2759382	Chr.5:140777355 - 141449115 on Build GRCh38	Gain	PCDHB15 PCDHB8 PCDHB5 PCDHB16 PCDHB14 PCDHGA5 PCDHB17P PCDHGA9 PCDHA9 PCDHGB4 PCDHA5 PCDHGA6 PCDHGA7 PCDHA12 PCDHGB5 PCDHB7 TAF7 PCDHB1 PCDHB9 PCDHAC2 PCDHGB2 PCDHA7 PCDHA4 PCDHB13 PCDHA3 PCDHGA4 PCDHA1 PCDHGB3 PCDHGA8 PCDHGB6 LOC101926905 PCDHGA10 PCDHGB7 SLC25A2 PCDHB6 PCDHB19P PCDHB3 PCDHGA2 PCDHA2 PCDHA6 PCDHGA3 PCDHGB1 PCDHB10 PCDHGA12 PCDHB11 PCDHAC1 PCDHGA11 PCDHB2 PCDHGB8P PCDHA8 PCDHA11 PCDHA13 PCDHB12 PCDHGA1 PCDHB18P PCDHB4 PCDHA10
dgv1652e212	Chr.5:140839141 - 140864158 on Build GRCh38	Loss	PCDHA4 PCDHA6 PCDHA9 PCDHA3 PCDHA8 PCDHA5 PCDHA2 PCDHA1 PCDHA10 PCDHA7
dgv138e203	Chr.5:140838209 - 140874533 on Build GRCh38	Loss	PCDHA4 PCDHA6 PCDHA9 PCDHA3 PCDHA8 PCDHA11 PCDHA5 PCDHA2 PCDHA1 PCDHA10 PCDHA7
nsv515909	Chr.5:140848414 - 140852761 on Build GRCh38	Loss	PCDHA4 PCDHA6 PCDHA9 PCDHA3 PCDHA8 PCDHA5 PCDHA2 PCDHA1 PCDHA7
esv3606958	Chr.5:140842689 - 140859762 on Build GRCh38	Loss	PCDHA4 PCDHA6 PCDHA9 PCDHA3 PCDHA8 PCDHA5 PCDHA2 PCDHA1 PCDHA10 PCDHA7
esv2421858	Chr.5:140844251 - 140857963 on Build GRCh38	Deletion	PCDHA4 PCDHA6 PCDHA9 PCDHA3 PCDHA8 PCDHA5 PCDHA2 PCDHA1 PCDHA10 PCDHA7
esv3566721	Chr.5:140840563 - 140861415 on Build GRCh38	Deletion	PCDHA4 PCDHA6 PCDHA9 PCDHA3 PCDHA8 PCDHA5 PCDHA2 PCDHA1 PCDHA10 PCDHA7
nsv514324	Chr.5:140844231 - 140859031 on Build GRCh38	Loss	PCDHA4 PCDHA6 PCDHA9 PCDHA3 PCDHA8 PCDHA5 PCDHA2 PCDHA1 PCDHA10 PCDHA7
dgv10096n54	Chr.5:140847633 - 140852761 on Build GRCh38	Loss	PCDHA4 PCDHA6 PCDHA9 PCDHA3 PCDHA8 PCDHA5 PCDHA2 PCDHA1 PCDHA7
esv26168	Chr.5:140842564 - 140859300 on Build GRCh38	Gain	PCDHA4 PCDHA6 PCDHA9 PCDHA3 PCDHA8 PCDHA5 PCDHA2 PCDHA1 PCDHA10 PCDHA7
dgv3182n106	Chr.5:140842552 - 140859353 on Build GRCh38	Deletion	PCDHA4 PCDHA6 PCDHA9 PCDHA3 PCDHA8 PCDHA5 PCDHA2 PCDHA1 PCDHA10 PCDHA7
dgv1043e199	Chr.5:140842260 - 140861207 on Build GRCh38	Deletion	PCDHA4 PCDHA6 PCDHA9 PCDHA3 PCDHA8 PCDHA5 PCDHA2 PCDHA1 PCDHA10 PCDHA7
nsv1024237	Chr.5:140810775 - 140852242 on Build GRCh38	Loss	PCDHA4 PCDHA6 PCDHA9 PCDHA3 PCDHA8 PCDHA5 PCDHA2 PCDHA1 PCDHA7
esv2730839	Chr.5:140842540 - 140859393 on Build GRCh38	Deletion	PCDHA4 PCDHA6 PCDHA9 PCDHA3 PCDHA8 PCDHA5 PCDHA2 PCDHA1 PCDHA10 PCDHA7
nsv1135376	Chr.5:140849315 - 140859915 on Build GRCh38	Deletion	PCDHA4 PCDHA6 PCDHA9 PCDHA3 PCDHA8 PCDHA5 PCDHA2 PCDHA1 PCDHA10 PCDHA7
nsv830508	Chr.5:140675388 - 140869073 on Build GRCh38	Loss	PCDHA6 VTRNA1-2 VTRNA1-3 HARS PCDHA7 PCDHA4 HARS2 PCDHA9 PCDHA3 PCDHA8 ZMAT2 VTRNA1-1 PCDHA11 PCDHA5 PCDHA2 PCDHA1 PCDHA10
nsv599841	Chr.5:140841349 - 140856513 on Build GRCh38	Loss	PCDHA4 PCDHA6 PCDHA9 PCDHA3 PCDHA8 PCDHA5 PCDHA2 PCDHA1 PCDHA10 PCDHA7
esv3890744	Chr.5:140846323 - 140857963 on Build GRCh38	Loss	PCDHA4 PCDHA6 PCDHA9 PCDHA3 PCDHA8 PCDHA5 PCDHA2 PCDHA1 PCDHA10 PCDHA7
dgv10092n54	Chr.5:140835344 - 140850785 on Build GRCh38	Loss	PCDHA4 PCDHA6 PCDHA9 PCDHA3 PCDHA8 PCDHA5 PCDHA2 PCDHA1 PCDHA7
esv29977	Chr.5:140843471 - 140856955 on Build GRCh38	Gain	PCDHA4 PCDHA6 PCDHA9 PCDHA3 PCDHA8 PCDHA5 PCDHA2 PCDHA1 PCDHA10 PCDHA7
dgv1044e199	Chr.5:140843360 - 140849907 on Build GRCh38	Deletion	PCDHA4 PCDHA6 PCDHA9 PCDHA3 PCDHA8 PCDHA5 PCDHA2 PCDHA1 PCDHA7

More Information

• Set Membership: Intragenic, Exonic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

cadherin

Gene Ontology Categories:

Process(es)

cell adhesion
homophilic cell adhesion via plasma membrane adhesion molecules
nervous system development

Function(s)

calcium ion binding
protein binding