Genomic Map
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Target Gene Details
Entrez Gene ID: | 58506 |
Gene Name: | SR-related CTD associated factor 1 |
Gene Aliases: |
SRA1 |
Location: |
Chr.19:49640483-49658649 on Build GRCh38 |
Assay Gene Location: | Within Exon 9 |
| Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
|---|---|---|---|---|
| SCAF1 | NM_021228.2 | 7 | 2648 | NP_067051.2 |
| XM_005259122.4 | 7 | 2931 | XP_005259179.1 | |
| XM_011527194.2 | 7 | 2573 | XP_011525496.1 | |
| XM_017027083.1 | 4 | 2375 | XP_016882572.1 | |
| AK024444.1 | 7 | 2648 | ||
| BC011662.2 | AAH11662.2 | |||
| BC018398.1 | 1 | 39 | AAH18398.1 | |
| BC053992.1 | 6 | 2535 | AAH53992.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
| Target Variation |
Location | CNV Subtype |
Genes |
|---|---|---|---|
| nsv469715 | Chr.19:49572544 - 49730286 on Build GRCh38 | Gain+Loss |
 ADM5
PRMT1
MIR5088
CPT1C
RRAS
IRF3
BCL2L12
PRR12
NOSIP
PRRG2
SCAF1
|
| nsv833865 | Chr.19:49572545 - 49730286 on Build GRCh38 | Gain+Loss |
ADM5
PRMT1
MIR5088
CPT1C
RRAS
IRF3
BCL2L12
PRR12
NOSIP
PRRG2
SCAF1
|
| nsv9739 | Chr.19:47901840 - 50143063 on Build GRCh38 | Gain+Loss |
SNAR-B1
ADM5
C19orf73
FAM83E
SNORD33
PRMT1
MAMSTR
CARD8
MIR150
LIG1
SNAR-C5
SIGLEC16
SNORD35A
PTH2
FLJ26850
ZNF114
PTOV1-AS2
CGB2
RPL18
SNAR-A6
DKKL1
RPL13A
RRAS
SNAR-G2
CGB5
NUCB1
NTF4
GYS1
PPP1R15A
CCDC114
SNORD32A
RPS11
IRF3
SNAR-A1
PRR12
CD37
BCAT2
FCGRT
FGF21
CGB8
CGB7
TULP2
SNAR-C2
SPHK2
FUZ
CARD8-AS1
TBC1D17
CPT1C
LMTK3
LOC105372430
PLA2G4C-AS1
TEAD2
SNAR-A3
SNAR-A13
LHB
SNAR-A11
SNAR-C1
SNORD35B
ELSPBP1
NOSIP
FLT3LG
SEC1P
MIR4750
SPACA4
ZNF473
BAX
HSD17B14
RUVBL2
MIR4324
SYNGR4
SNAR-A14
SNAR-A7
GRWD1
FTL
CGB3
SNAR-A4
SNAR-A9
MED25
HRC
BCL2L12
FUT1
DBP
AP2A1
BSPH1
AKT1S1
SNAR-A2
PPFIA3
LOC101928295
SNAR-C3
RASIP1
TRPM4
SCAF1
RCN3
MIR6799
NUP62
LOC105447645
SNAR-A8
MIR4751
SNAR-A5
SNAR-G1
SNAR-A10
SLC6A16
PLEKHA4
SULT2B1
SIGLEC11
PTOV1-AS1
SLC17A7
C19orf68
CYTH2
IL4I1
CABP5
NTN5
LIN7B
SNRNP70
CCDC155
MIR6798
SNORD34
LOC100287477
IZUMO1
GRIN2D
FUT2
TSKS
NUCB1-AS1
SNAR-A12
KCNA7
PLA2G4C
PTOV1
SNAR-C4
SNAR-B2
MIR5088
PIH1D1
PNKP
KCNJ14
ATF5
MIR4749
CA11
CGB1
KDELR1
EMP3
ALDH16A1
SNAR-D
TMEM143
DHDH
MIR6800
GFY
PRRG2
VRK3
LOC101059948
|
| nsv817854 | Chr.19:49618821 - 49726387 on Build GRCh38 | Gain |
ADM5
PRMT1
MIR5088
CPT1C
RRAS
IRF3
BCL2L12
PRR12
SCAF1
|
| nsv579909 | Chr.19:49649784 - 49659652 on Build GRCh38 | Loss |
IRF3
SCAF1
|
| nsv953600 | Chr.19:49555044 - 49938043 on Build GRCh38 | Deletion |
AP2A1
PTOV1
AKT1S1
ADM5
FUZ
TBC1D17
PRMT1
MIR5088
CPT1C
PNKP
SCAF1
MIR6799
NUP62
ATF5
MIR4751
MIR4749
PTOV1-AS2
NOSIP
MIR4750
PTOV1-AS1
MIR6800
RRAS
IL4I1
PRRG2
MED25
TSKS
IRF3
BCL2L12
PRR12
|
| nsv833864 | Chr.19:49551790 - 49733819 on Build GRCh38 | Gain |
ADM5
PRMT1
MIR5088
CPT1C
RRAS
IRF3
BCL2L12
PRR12
NOSIP
PRRG2
SCAF1
|
| nsv1160655 | Chr.19:49489110 - 49841830 on Build GRCh38 | Deletion |
AP2A1
ADM5
FUZ
SNORD33
PRMT1
MIR5088
CPT1C
MIR150
SCAF1
RCN3
SNORD35A
MIR6799
SNORD35B
NOSIP
PTOV1-AS1
MIR6800
RPL13A
RRAS
PRRG2
SNORD32A
SNORD34
MED25
RPS11
TSKS
IRF3
BCL2L12
PRR12
FCGRT
|
| nsv828578 | Chr.19:49560777 - 49680548 on Build GRCh38 | Loss |
PRMT1
RRAS
IRF3
BCL2L12
PRR12
NOSIP
PRRG2
SCAF1
|
| nsv579908 | Chr.19:49645135 - 49663393 on Build GRCh38 | Loss |
IRF3
SCAF1
|
Back To TopMore Information
Set Membership: |
Intragenic
Exonic
DGV Variation
|
Panther Classification:
Molecular Function -
RNA metabolism protein
RNA processing factor
RNA splicing factor
nucleic acid metabolism protein
Gene Ontology Categories:
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